Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq17206 911 0.0 seq19565 187 8e-43 seq17873 82.4 3e-11 >seq17206 Length=1844 Score = 911 bits (1010), Expect = 0.0 Identities = 1302/1812 (72%), Gaps = 41/1812 (2%) Strand=Plus/Plus Query 39861 GCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTC 39920 || ||||| || | ||||| || ||||| | | | ||||||| ||| || | | | Sbjct 1 GCGCGGCGGAGGATTTCGGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGAC 60 Query 39921 TGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGAC 39980 || |||||||| |||||||| || | |||||| || ||||| ||| ||| | Sbjct 61 ATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGT 120 Query 39981 TCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAG 40040 || | | |||||| |||||||| ||||||| |||| | |||||||| || || |||||| Sbjct 121 TCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAG 180 Query 40041 TTCGTGTGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGATG 40100 || ||||| || | | ||||| || || || ||||||||||||| || ||||||||| Sbjct 181 TTGGTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATG 240 Query 40101 TCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGC 40160 |||||||||||||| ||||||| || || ||||| |||||| | ||||||||||||| Sbjct 241 TCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGC 300 Query 40161 TGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGG 40220 ||||| || |||||||||||| | ||| ||||| ||||| | | | |||||| || Sbjct 301 TGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGC 360 Query 40221 GGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCG 40280 | | ||| ||||||| | || || |||||||||||||||||||||| |||||| Sbjct 361 TCAAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCC 420 Query 40281 CCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCG 40340 |||||||||||||| || ||||| |||||||||||||| | |||||| || ||||| Sbjct 421 GAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCG 480 Query 40341 CAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGG 40400 ||| ||||||||||||||||||||| || |||||||||| || | || |||| Sbjct 481 CAGGTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGCGGG 540 Query 40401 ATGTGGTCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGC 40460 ||| ||||| |||||| ||| |||||||| || || || |||||||| ||| |||| Sbjct 541 ATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGC 600 Query 40461 CGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAG 40520 || || || ||||| |||||||| |||||| || ||| || || || || | Sbjct 601 CGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATCCTCG 660 Query 40521 CCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATC 40580 | | | |||||| |||||| ||||||| ||| || |||||||| | || | ||| Sbjct 661 GTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGTGATG 720 Query 40581 CCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCG 40640 || ||| || || || |||| ||| ||| ||| |||||| || ||||||||| Sbjct 721 CCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCG 780 Query 40641 CCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTG 40700 || | ||| || | | |||||||| | |||||||||| ||| | || |||| Sbjct 781 CCCATGCCGAACGGGAAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTG 840 Query 40701 ATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTAC 40760 ||| ||||| || |||||||||| || ||| | ||||||||| |||||||||| Sbjct 841 ATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTAC 900 Query 40761 TGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40820 | ||| |||||||| ||||| || ||||||||||||| ||||| |||||||| || ||| Sbjct 901 TTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACG 960 Query 40821 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTG 40880 || |||||||| ||||| |||||||||||||| ||||||| |||||| ||||| |||||| Sbjct 961 CGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTG 1020 Query 40881 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAG 40940 || | | | |||||||||||| || || || | ||||| || || ||||| || | | Sbjct 1021 ATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGG 1080 Query 40941 ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAG 41000 | |||||| ||||||| |||| ||||||||| ||||| ||||||||||| |||||| Sbjct 1081 ATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAG 1140 Query 41001 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCCG-- 41058 |||||||| |||| | | |||||||||||| | |||||||| || | |||| | Sbjct 1141 CCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGG 1197 Query 41059 -TGCCGTTCGGGTACCGACGACGCGCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGATC 41117 ||||| ||||||| || || || ||||||| | ||||||| || | Sbjct 1198 ATGCCGCTCGGGTAGCGGTAGTGCAACCCCTTCTCGACCTCCTTGATGAACCAGCTGTCC 1257 Query 41118 TCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTT----CTCGTGCTCGAACAT 41173 || || | || ||||||||||| | |||||| ||| |||| | |||| Sbjct 1258 TCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAACTC 1316 Query 41174 GCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGTCCGCATCCCCCACTCCCAGAT 41233 | | || | || |||||||||| |||||| | || | | | | | Sbjct 1317 GACATTGCAG-CG-----CTCGGCGATGAGGAGCGTGTT----GTCGCACGCGTCGGGGA 1366 Query 41234 GGGAGAGGAGTCGATG-GCCGCCATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCT 41292 | | ||| | ||| |||| ||||||||| || | ||| |||||||| || ||||| | Sbjct 1367 AGTCGCGGAAT--ATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCCGT 1423 Query 41293 CGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCAT 41352 |||| |||||||| |||| ||||| || ||| | ||| ||||| ||||| || Sbjct 1424 CGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGC-- 1481 Query 41353 CGTGAGCGACCGACTCCTCGGC--GGTG-ACGTAGTGGGAATCGTTCGTGACCACCGGAG 41409 || | ||| || | ||||| ||| |||||||| |||||||||| | || | | Sbjct 1482 CGAGTGCG-CCTCGGCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGACGAGCG 1540 Query 41410 TGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGA 41469 || | ||||| | ||| | | || || |||||||||||||||| |||| Sbjct 1541 GGATCTTGAGGTCGCGCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGTCGA 1600 Query 41470 TGCCGTGGTCCATCAGCTC-CAG--GAAGTACCGGTCACGCCCGAAGACCTCCAGGTAC- 41525 ||||||||||| ||||| ||| ||||| | || | ||||||| ||| || || Sbjct 1601 GCCCGTGGTCCATGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAGATGTCCTGGAACT 1657 Query 41526 CGACCGGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTCAGCCGGGTCATGATCGCA 41585 || || ||| ||| | |||||||||||||||||||||| ||| |||||| |||| | Sbjct 1658 CGGCC-GCCGCCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATCTCG 1716 Query 41586 CCGCCAGGACATCCGGTCGTGACGACCAGGCCCTCGTTGT-GCTCGGCGACCAGGTCGAA 41644 || || || || |||||| || ||||||| | || | || || | ||| ||| Sbjct 1717 CCCGAGGGGCAACCCGTCGTGGTGATGAGGCCCTTGCCGTAGGTCTGC-AGCAGCTCGCG 1775 Query 41645 GTCCATGCGCGG 41656 |||||| || || Sbjct 1776 GTCCATACGGGG 1787 >seq19565 Length=416 Score = 187 bits (206), Expect = 8e-43 Identities = 255/355 (72%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 39552 GGCGGCAGGACCCGCAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTC 39611 |||||||| ||| | ||||||||| || ||||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 39612 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTC 39671 || |||||| || |||||| ||||||||||||||||| ||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 39672 AGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39731 || | || || | ||| || || |||||||| |||||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 39732 TAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCT 39791 ||| | | |||||||| ||| | |||||| | |||| ||| || | || || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 39792 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GCTTC 39848 ||||| | || | |||| | || ||| |||| | || ||||| |||| Sbjct 126 CGCTCCTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTC 70 Query 39849 TTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCA 39903 |||||||||||||| ||||| || | |||||| || ||||| | | | ||||||| Sbjct 69 TTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAGCGAGAAGCCGGCCA 15 >seq17873 Length=3337 Score = 82.4 bits (90), Expect = 3e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 39104 GAGCGACGCCTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCG 39163 ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||| || Sbjct 487 GAGCGCGGCCTCGAGCCCGCGCAGCGGGTGGTCGGAGACGTAGAGGCCCAGCATCTCGCG 428 Query 39164 CTCGA 39168 ||||| Sbjct 427 CTCGA 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164779107183612