Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021321.1 Length=74519 Score E Sequences producing significant alignments: (Bits) Value seq17909 86.0 3e-12 >seq17909 Length=1521 Score = 86.0 bits (94), Expect = 3e-12 Identities = 158/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 36419 GAGCTGGCAAATCCGCATCCCGTCGCGGAGTCGAATCGGGTACGGAGCCG-CGTTGAACA 36477 |||||||| ||| ||| ||| | || || ||||| | || | || |||| ||| Sbjct 1203 GAGCTGGCCGATCTTCATGCCGGGCCACAGGCGGATCGGC-AGGGTGGCGACGTTCGACA 1261 Query 36478 GTTCGAGCGTCACCTGCCCCCGGAAACCGGGGTCGATGAAGCCTG-CGT--TGTGGATGA 36534 | |||||||| || |||||| ||| ||||||||||||||||| | ||| |||| ||| Sbjct 1262 GCTCGAGCGTGACATGCCCCTCGAAGCCGGGGTCGATGAAGCCGGCCGTCGAGTGGGTGA 1321 Query 36535 ACAGGCCGAGTCGCCCGACCGAGCTACGTCCGTGGAGGATACCCACCTTGTCGTCGGGGA 36594 ||| ||||| || |||| |||||| || | ||| || | |||||||||| | Sbjct 1322 GCAGTCCGAGGCGACCGAGCGAGCTCTTGCCCTCGAGCCGGGCCGCGATGTCGTCGGGCA 1381 Query 36595 TGGTGATGTTCTCCTCCGTGTGAGCC-AGCGCGAACTTGCCGGG 36637 | || ||||| ||| ||||| ||| |||||| ||| || Sbjct 1382 GCGAGACCTTCTCGAAGGTG-GAGCCGAGCACGAACTCGCCCGG 1424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238238520501520