Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq17206 942 0.0 seq19565 172 2e-38 seq17873 89.7 2e-13 >seq17206 Length=1844 Score = 942 bits (1044), Expect = 0.0 Identities = 1314/1818 (72%), Gaps = 53/1818 (3%) Strand=Plus/Plus Query 39321 GCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTC 39380 || ||||| || | ||||| || || || | | | ||||||| ||| || | | | Sbjct 1 GCGCGGCGGAGGATTTCGGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGAC 60 Query 39381 TGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGAC 39440 ||||||||||| |||||||||| | | |||| || ||||| ||| ||| | Sbjct 61 ATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGT 120 Query 39441 TCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAG 39500 || | | |||||| |||||||| ||||||| |||| | |||||||| || || |||||| Sbjct 121 TCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAG 180 Query 39501 TTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATG 39560 || ||||| || | | ||||| || ||||| ||||||||||||| || || |||||| Sbjct 181 TTGGTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATG 240 Query 39561 TCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGC 39620 |||||||||||||| ||||||| ||||| ||||| |||||| | ||||||||||||| Sbjct 241 TCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGC 300 Query 39621 TGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGA 39680 ||||| || |||||||||||| | ||| ||||| ||||||| || |||||||| || Sbjct 301 TGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGC 360 Query 39681 GGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCG 39740 | | ||| ||||||| | || || |||||||||||||||||||||| |||||| Sbjct 361 TCAAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCC 420 Query 39741 CCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCG 39800 |||||||||||||| || ||||| |||||||||||||| | |||||| || ||||| Sbjct 421 GAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCG 480 Query 39801 CAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGCCGAACCCACACCGGG 39860 ||| ||||||||||||||||||||| || |||||||||| || | || |||| Sbjct 481 CAGGTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGCGGG 540 Query 39861 ATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGC 39920 ||| ||||| ||| || ||| |||||||| || || || |||||||| ||| |||| Sbjct 541 ATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGC 600 Query 39921 CGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAG 39980 || || || ||||| |||||||| |||||| || ||| || || || || | Sbjct 601 CGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATCCTCG 660 Query 39981 CCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATG 40040 | | | |||||| |||||| ||||||| ||| || |||||||| | || | |||| Sbjct 661 GTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGTGATG 720 Query 40041 CCTTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCG 40100 || ||| || || || |||| ||| ||| ||| |||||| || ||||||||| Sbjct 721 CCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCG 780 Query 40101 CCGACCTGGAAGGGCTTGTCGAGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTG 40160 || | ||| || | |||||||||| | ||||||||||| ||| | || |||| Sbjct 781 CCCATGCCGAACGGGAAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTG 840 Query 40161 ATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTAC 40220 ||| ||||| || |||||||||| || ||| | ||||||||| |||||||||| Sbjct 841 ATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTAC 900 Query 40221 TGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40280 | |||||||||||| ||||| || ||||||||||||| ||||| |||||||| || ||| Sbjct 901 TTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACG 960 Query 40281 CGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTG 40340 || |||||||| ||||| |||||||||||||| ||||||| |||||| ||||| |||||| Sbjct 961 CGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTG 1020 Query 40341 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAG 40400 || | | | |||||||||||| || || || | ||||| || || ||||| || | | Sbjct 1021 ATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGG 1080 Query 40401 ACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAC 40460 | ||||| ||||||| |||| ||||||||| ||||| ||||||||||| ||||| Sbjct 1081 ATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAG 1140 Query 40461 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCCG-- 40518 |||||||| |||| | | |||||||||||| | |||||||| || | |||| | Sbjct 1141 CCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGG 1197 Query 40519 -TGCCGTTCGGGTACCGACGACGGGCA--CCTCGATGGACCTCGTCCTCGAACCAGGTGA 40575 ||||| ||||||| || | | ||| || | |||||| | ||||||| || Sbjct 1198 ATGCCGCTCGGGTAGCG--GTAGTGCAACCCCTTCTCGACCTCCTTGATGAACCAGCTGT 1255 Query 40576 TCTCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTT----CTCGTGCTCGAAC 40631 ||| || | || ||||||||||| | |||||| ||| |||| | |||| Sbjct 1256 CCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAAC 1314 Query 40632 ATGCCCGTGGTGTCGACCATCTCGGCGATCTCCAGCGTGGTCTTCATGCCCCACTGCCAG 40691 | | || | || ||||||||| |||||| || | ||| || Sbjct 1315 TCGACATTGCAG-CG-----CTCGGCGATGAGGAGCGTG------TTGTCGCAC-GC--- 1358 Query 40692 ATCGGCGAAGAGTCG--AT---CGCCGCCATCTCTTCGGCGGACTTCAGGTAGTACCCGG 40746 |||| |||| || || |||| |||||| | |||| ||| |||||||| || | Sbjct 1359 GTCGGGGAAGTCGCGGAATATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCG 1417 Query 40747 AGCCCTCGAAGCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCACAGCA 40806 |||| ||||| |||||||||||||| |||||| || ||| | ||| ||||| |||| Sbjct 1418 AGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCA 1477 Query 40807 GTGCATCGTGAGCGACCGACTCCTCGGC--GGTG-ACGTAGTGGGAATCGTTCGTGACCA 40863 | || || | ||| || | ||||| ||| |||||||| |||||||||| | | Sbjct 1478 GCGC--CGAGTGCG-CCTCGGCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGA 1534 Query 40864 CCGGAGTGAGCGCGAGGTGCTTCCCGAGCCGGTACAGGTCGTCACGGACCCGGCGCTCGA 40923 | | | || | ||||| | ||| | | |||||| ||||||||||||||| Sbjct 1535 CGAGCGGGATCTTGAGGTCGCGCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGA 1594 Query 40924 TCTCGATGTCGTGGTCCATGAGTTCG-AGCAG--GTACCGGTCACGCCCGAAGACCTCCA 40980 | |||| ||||||||||||| ||| || || || | || | ||||||| ||| Sbjct 1595 TGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAGATGTCCT 1651 Query 40981 GGTAC-CGACCAGCCTCCTTCACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATG 41039 || || || || ||| ||| | |||||||||||||||||||||| || |||||| | Sbjct 1652 GGAACTCGGCC-GCCGCCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGG 1710 Query 41040 ATCGCACCGCCAGGGCAGCCAGTCGTGACGACCAGGCCCTCGTTGT-GCTCGGCGACCAG 41098 ||| | || ||||| || |||||| || ||||||| | || | || || | ||| Sbjct 1711 ATCTCGCCCGAGGGGCAACCCGTCGTGGTGATGAGGCCCTTGCCGTAGGTCTGC-AGCAG 1769 Query 41099 CTCGAAGTCCATGCGCGG 41116 |||| |||||| || || Sbjct 1770 CTCGCGGTCCATACGGGG 1787 >seq19565 Length=416 Score = 172 bits (190), Expect = 2e-38 Identities = 252/355 (71%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 39012 GGCGGCAGGACCCGAAGGCCCATGCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTC 39071 |||||||| ||| | ||||||||| || |||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 39072 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 39131 || |||||| || |||||| ||||||||||||||||||||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 39132 AACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39191 | | || || | ||| || || |||||||| |||||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 39192 TAGCCAGCGAAGGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCT 39251 ||| | | ||| |||| ||| | |||||| | |||| ||| || | || || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 39252 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GCTTC 39308 ||||| | || | |||| | || ||| |||| | || ||||| |||| Sbjct 126 CGCTCCTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTC 70 Query 39309 TTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCA 39363 |||||||||||||| ||||| || | |||||| || || || | | | ||||||| Sbjct 69 TTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAGCGAGAAGCCGGCCA 15 >seq17873 Length=3337 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 38564 GAGCGATGCCTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCGCG 38623 ||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 487 GAGCGCGGCCTCGAGCCCGCGCAGCGGGTGGTCGGAGACGTAGAGGCCCAGCATCTCGCG 428 Query 38624 CTCGATGGCGAG 38635 ||||| ||||| Sbjct 427 CTCGAACGCGAG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163259712923562