Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq17206 118 1e-21 >seq17206 Length=1844 Score = 118 bits (130), Expect = 1e-21 Identities = 220/317 (69%), Gaps = 7/317 (2%) Strand=Plus/Minus Query 105009 GAGGTCCGCACCATCAC-CAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTA 105067 ||| || || |||||| ||| | | |||| |||| |||||| ||| |||||||||| Sbjct 1166 GAGATCGGCGTCATCACGCAG-ATGGGCTTCCCCGGCTACTTCCTCGTGGTCGCCGACTT 1108 Query 105068 CACCAAGTGGGCTAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGG 105124 || ||| ||| | |||||| |||| | ||| || ||||| ||||| |||| || || Sbjct 1107 CATCAACTGGTCGAAGGACAACGGCATCCGCGTGGGCCCCGGTCGTGGCTCGGGCGCGGG 1048 Query 105125 CTCGCTCGTCTCGTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGAT 105184 || | ||| | ||| ||| ||||||||| ||||| ||| | || ||| || || Sbjct 1047 ATCCATGGTCGCCTACGCCATGCGCATCACCGATCTCGATCCGCTGCAGCACGGACTCAT 988 Query 105185 GTTCGAGCGGTTCATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCC 105244 |||||||| ||| || || || || | |||||| |||| |||||||| Sbjct 987 CTTCGAGCGATTCCTCAACCCCGACCGCGTCTCGATGCCCGACTTCGACGTCGACTTCGA 928 Query 105245 GCAGAAGCGTCGCGGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCCACGACTGCGT 105304 | ||||||||||||||| || | ||| || |||| |||||| |||| |||| Sbjct 927 TGATCGCCGTCGCGGCGAGGTCATCAAGTACGTCACCGAGAAGTACGGCGACGAGCGCGT 868 Query 105305 CTGCTC-GATCGGCACC 105320 || | ||||| |||| Sbjct 867 -GGCGCAGATCGTCACC 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455882282825720