Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq17384 105 7e-18 seq16951 82.4 8e-11 >seq17384 Length=2032 Score = 105 bits (116), Expect = 7e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 148128 TTACGGGGTGTAGCTTAGCTTGG-TAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTT 148186 || ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 54 TTTCGGGGCGTAGCTCAGCTTGGCTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTT 113 Query 148187 CAAATCCTGCCACCCCGA 148204 | ||||||| | |||||| Sbjct 114 CGAATCCTGTCGCCCCGA 131 >seq16951 Length=1564 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 147056 TCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTTGGTCGCAGGTTCAAATCCT 147115 || ||||||||| |||||||||||| ||||||||| | || |||||||||||| |||||| Sbjct 78 TCCGTAGCTCAGTGGATAGAGCAACGGCCTTCTAATCCGTCGGTCGCAGGTTCGAATCCT 137 Query 147116 GCC 147118 ||| Sbjct 138 GCC 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549391840273480