Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13386 176 4e-39 seq30935 152 5e-32 seq16010 152 5e-32 seq31956 116 3e-21 seq2100 89.7 5e-13 >seq13386 Length=19191 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| |||||||| || | ||||| ||||| | Sbjct 13237 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCT 13178 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||||||||||||||| || || || ||| Sbjct 13177 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 13118 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| ||||| |||| ||| |||| | | || |||||||| Sbjct 13117 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAAT 13058 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| |||||||| ||| ||||| | ||||| Sbjct 13057 ATTCAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGAGGAGG 13011 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || ||||| || || || ||||| ||||| | Sbjct 13974 ATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTCT 13915 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| |||||||| || || |||||| Sbjct 13914 GACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 13855 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAA 24882 |||||| | || |||||||| ||||| |||| ||| || |||| ||| ||||| || Sbjct 13854 CAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATG-GACGCACATTGTCTGATTACAA 13796 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| ||||||||||| || || |||||||| Sbjct 13795 CATCCAAAAGGAATCTACCCTTCACTTGGT 13766 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || || ||||| || || | ||||| ||||| | Sbjct 14202 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTCT 14143 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| |||||||| || || || ||| Sbjct 14142 GATACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 14083 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| ||||| |||| ||| |||| | | || || || ||| Sbjct 14082 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAAC 14023 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| ||||| |||||||| ||| ||||| | ||||| Sbjct 14022 ATCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGG 13976 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | ||||| || || || || || ||||| || || | Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||||||||||||||| || || || ||| Sbjct 12365 GATACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 12306 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| ||||| |||| || |||| | | || || || ||| Sbjct 12305 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAAC 12246 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| ||||| |||||||| Sbjct 12245 ATTCAAAAAGAATCAACACTCCACTTGGT 12217 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| ||||| || || | ||||| |||||| | Sbjct 12197 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTCT 12138 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| |||||||| || || |||||| Sbjct 12137 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 12078 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| ||||| |||| ||| | | | || || || ||| Sbjct 12077 CAACGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACAAC 12018 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||||||||| || || ||||| Sbjct 12017 ATCCAAAAGGAATCGACTCTTCATTTGGT 11989 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || || ||||| || || | ||||| ||||| | Sbjct 13746 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCG 13687 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||| || ||||| ||||||||||| || || || ||| Sbjct 13686 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCAGACCAA 13627 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| |||||||| ||||| |||| ||| |||| | || || || ||| Sbjct 13626 CAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTACAAC 13567 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| || || || || |||||||| Sbjct 13566 ATCCAAAAAGAGTCCACCCTCCACTTGGT 13538 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| ||||| || || | ||||| ||||| | Sbjct 12707 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAAACCATCACATTGGAAGTTGAAGCTTCT 12648 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| |||||||| || || || ||| Sbjct 12647 GACACCATCGAAAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 12588 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | |||||||||||||| Sbjct 12587 CAAAGATTGATCTTTGCCGG 12568 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| | ||||| ||||| || || | ||||| ||||| | Sbjct 13518 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTCGAAGCTTCT 13459 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| |||||||| || || || ||| Sbjct 13458 GACACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAA 13399 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | |||||||| || || Sbjct 13398 CAAAGATTGATCTTCGCTGG 13379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| || || || || || ||||| ||||| | Sbjct 14549 ATGCAAATTTTTGTCAAAACACTTACCGGAAAGACCATCACACTTGAAGTCGAAGCTTCT 14490 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| ||||||||||||||||| || || || ||| Sbjct 14489 GATACCATCGAAAATGTGAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGACCAA 14430 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| | ||||| || || Sbjct 14429 CAACGTCTCATCTTCGCAGG 14410 >seq30935 Length=6295 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || ||||| || ||||| |||||||| || ||| | Sbjct 1268 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCG 1327 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||||||||| |||||||| || || |||||| Sbjct 1328 GACACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 1387 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||| ||||| ||||| || |||||| | | | || || || ||| Sbjct 1388 CAAAGATTGATCTTCGCCGGAAAACAACTCGAGGATGGACGTACTCTTTCCGACTACAAC 1447 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || |||||||| | || | || ||||| Sbjct 1448 ATCCAAAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTTCGTGGAGG 1494 >seq16010 Length=816 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||| | | ||||| | || || |||||||| || |||||||| ||||| || Sbjct 364 ATGCAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCC 305 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||| || ||||| || |||||||| || || ||||| Sbjct 304 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGATAACGAAGGAATCCCACCACATCAA 245 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| |||||||| ||||| |||| ||| |||| | || ||||| ||| Sbjct 244 CAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACAAC 185 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| ||||| || ||||| Sbjct 184 ATCCAAAAGGAATCAACACTCCATTTGGT 156 >seq31956 Length=51777 Score = 116 bits (128), Expect = 3e-21 Identities = 329/497 (66%), Gaps = 10/497 (2%) Strand=Plus/Plus Query 138144 CAGTGAAGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATA 138203 || || || ||| || |||||||| | | |||| | |||||||| ||||||| ||| Sbjct 35107 CAATGCAGTTTTGTCAACAGTAAATTGAACAGCATTCACAGCTGGTTTTGTTCTCAAATA 35166 Query 138204 ATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGC 138263 ||||||||| || || || || || | ||| | || | || || || |||| || Sbjct 35167 ATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCGGC 35226 Query 138264 GTAAGTCGGTTTCGCCAGA--AATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCT 138321 ||| | ||||| |||| | ||||| | |||| ||| ||||| |||||||| || Sbjct 35227 ATAACTTGGTTTAGCCATATGAATAT-TCAAAC-TTTGTGATTGATCAATGAAAGCTCCG 35284 Query 138322 CGATCAATGGCCATGTTAAT--TAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATA 138379 ||||| ||||| | ||| | ||||| | | || ||||| || || ||||| | Sbjct 35285 CGATCTGCAGCCATCTCAATAATCTCTTTTTGCGAT--ATTTCCCAAACTGTTTTGTACA 35342 Query 138380 GATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGA 138439 || || | || ||| | ||||||||||||| || ||| ||||| | Sbjct 35343 ACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTGAATCGATCCATTGCTGGCAATCA 35402 Query 138440 TGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATAT 138498 |||||| |||| ||||| | | | || ||| || | ||| || || | || || | Sbjct 35403 ATCGATTTTTCATATCATCATCCCATA-ATCCAAGTTCAACCAAATCCTTCAACAAATGT 35461 Query 138499 CTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAA 138558 || | | || || || || | ||| || || ||| || || ||| ||| | Sbjct 35462 GGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGTAT 35521 Query 138559 GGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCC 138618 || |||| || || |||||||| || || ||||| |||| || || ||||| ||| Sbjct 35522 GGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAGCC 35581 Query 138619 ACCAAAAGAGAATTCCG 138635 | | |||||||||||| Sbjct 35582 ATGAGAAGAGAATTCCG 35598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 335/517 (65%), Gaps = 17/517 (3%) Strand=Plus/Plus Query 139125 TTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCT 139184 ||| | |||||| | |||||||| || || || || || | |||||||||||| | Sbjct 36128 TTCCATAATTTCAGTGCACAAATTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGT 36187 Query 139185 TTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTC 139244 |||||| ||| |||||||| || ||||| || | ||||| || | ||| || Sbjct 36188 TTTTCGATTAGCCGCATCTTTATATGTGATATAAGGCATTCCAGTCTCAATTTGATTCGA 36247 Query 139245 TATAATGAATTTGAACAAGTCCCTAGCTTGTA---TTTGACGCACGTAAAGTTCGTCGCG 139301 || || | |||| | || |||| | ||| | ||| | | | || Sbjct 36248 TACAACATGCTCCCACAATTTTCTCGCTTTCACAGTTTTTCTCACTTT---TCCCTCTTT 36304 Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||| || || ||| || | ||||| |||||| | | ||| || | |||| Sbjct 36305 CTCATATTTGGTGTAAAGAGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACA 36364 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTT-GACGCGCCTCATGAACAGAT 139420 | | ||| ||||| |||||||| | ||| | | || |||||| ||||||||| || Sbjct 36365 TTCGCAAGGGCACATTAGCGACCAATCTTCGT-CTCTTTCGACGCGTTTCATGAACAAAT 36423 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480 | || | ||| | ||| | | | |||||| || ||| ||||| | || |||| Sbjct 36424 CTGGGACCCAAAGAGCCAGGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTT-- 36481 Query 139481 GTTTCATGTTA---AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 ||| | | | ||| || |||| || || ||||||||||| ||||| || || | Sbjct 36482 -TTTGCGGAGAGCGACGAATTCGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAA 36540 Query 139538 TTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGC 139594 || ||| |||||| |||||||||||||| | || | | || ||| | |||| Sbjct 36541 AGGCACCTGGACGTTTGTTTCCACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGC 36600 Query 139595 GCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT 139631 | | ||| || | ||||| | | |||||||||||| Sbjct 36601 GAAGCATTGGAACAAGACCATTTGATGTTCCGTTGGT 36637 >seq2100 Length=124 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| || ||||| ||||| || || | ||||| ||||| ||||||| | |||| Sbjct 3 AAAACACTTACCGGAAAAACCATCACTTTGGAAGTCGAAGCTTCCGACACCATCGAAAAT 62 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| |||||||||||||| || ||||| || || |||||||||||| | || || Sbjct 63 GTCAAAGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAACAACGTCTCATTTTC 122 Query 24839 GC 24840 || Sbjct 123 GC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449708873580520