Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq17056 389 2e-103 >seq17056 Length=1684 Score = 389 bits (430), Expect = 2e-103 Identities = 560/782 (72%), Gaps = 17/782 (2%) Strand=Plus/Plus Query 66142 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 66201 || || || || || ||||| || ||||| ||||||| ||| || |||||||| ||| | Sbjct 419 GTCGAGGTGATCCCGACCGGTTCGATCGCACTGGACGTCGCGCTCGGCATCGGCGGGCTC 478 Query 66202 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66261 ||| | ||||| | | || |||||||| || || || || || ||| | ||||| Sbjct 479 CCGCGCGGCCGCATCATCGAGATCTACGGTCCGGAGTCCTCGGGCAAGACCACTCTCACG 538 Query 66262 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66321 || |||||| | || || |||||| ||||| |||| |||||| | ||||||||| ||| Sbjct 539 CTGCACGCGATCGCGAACGCGCAGCGCGCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 598 Query 66322 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66381 ||| | || ||||| |||||||| || |||||| || ||| |||| || | || Sbjct 599 CACGCGCTCGACCCCGAGTACGCGCAGAAGCTCGGCGTCGACATCGATTCGCTGCTCGTC 658 Query 66382 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66441 ||||| ||||| || |||||||| || ||||||| ||| | || || || || Sbjct 659 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGATCCGTTCGGGG 718 Query 66442 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66501 | | | | ||||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 719 TCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 778 Query 66502 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66561 ||||| || || ||||| ||||| |||||||| ||||| |||||||||||||| | ||| Sbjct 779 GGCGAGATGGGCGACAGCCACGTGGGCCTGCAGGCGCGACTCATGTCGCAGGCGCTCCGC 838 Query 66562 AAGCTCACCGGCACCATCT---CCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 66618 ||| | || ||| ||| |||| ||||| || || ||| |||||||| | Sbjct 839 AAGATGACGGGCGG--TCTGAACCAG-ACCAAGACCACCGCGATCTTCATCAACCAGCTC 895 Query 66619 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCT 66678 ||||||||| ||||| | | | | |||| |||||| ||| |||| |||||||| Sbjct 896 CGCGAGAAGGTCGGCGTCTTCTTCGGCAGCCC---CGAGACGACCTCGGGGGGCAAGGCG 952 Query 66679 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 66738 | | ||||||||| || ||||| | || |||| |||||| ||| |||||| ||| Sbjct 953 CTCAAGTTCTACGCGTCGGTCCGTCTCGACATCCGCCGCATCCAGACCCTGAAGGACGGC 1012 Query 66739 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG 66798 | || || ||||||||||||||||| || |||||||||||||||||| |||| || || Sbjct 1013 CAGGACGCGGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCTCCCCCC 1072 Query 66799 CACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGG--TCGAAC 66856 | | ||||||||| | || | ||||| | |||||||| || |||| ||| | Sbjct 1073 TTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCTCGCGAGGGTTCG--C 1130 Query 66857 TCCTCGACCTGGCCGTGTC--GCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTA 66914 || ||||| | | ||||| ||| || || || |||||| || |||||| || || Sbjct 1131 TCATCGACTT--CGGTGTCGAGCACGGTCTCGTCAAGAAGAGCGGTTCCTGGTACACCTA 1188 Query 66915 CG 66916 || Sbjct 1189 CG 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244520750016356