Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq30935 125 5e-24 seq13386 120 2e-22 >seq30935 Length=6295 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||| || ||||| ||||| || || | || |||| Sbjct 1479 AGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCC 1420 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| |||||||||||||||| || ||| || ||| | || | || |||||||| Sbjct 1419 TCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCT 1360 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | || ||||||||| || | ||| || ||| Sbjct 1359 TGGATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTC 1300 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || ||||| || ||||| || ||||| ||||||| Sbjct 1299 TTACCCGTCAGAGTCTTGACGAAGATTTGCATGA 1266 >seq13386 Length=19191 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||||| ||||| |||| |||| ||| | || || | ||||| ||||| ||||| ||| Sbjct 13009 TTCCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGAT-TCCTTTTGAATATTATAATCC 13067 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | | |||| |||| ||| |||||||||||||||| || ||| |||||| | Sbjct 13068 GAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 13127 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || || ||||| | || || ||||| | | || | ||| || ||| Sbjct 13128 GGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCG 13187 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| || || || || ||||||||||| || || || ||||| Sbjct 13188 ACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| || || |||| |||| |||| ||| |||||||||||| Sbjct 12007 TCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAG 12066 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| || ||| | || | || |||||||| | || || |||||| | Sbjct 12067 ATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTT 12126 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| ||| ||||| || | ||| ||||| || || ||||||||||| || Sbjct 12127 TCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACG 12186 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 12187 AAAATTTGCAT 12197 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||||| || | | || |||| ||| | || || | || || |||||||| ||||| Sbjct 12197 TTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGAT-TCTTTTTGAATGTTGTAGTCG 12255 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | | | || |||| ||| |||||||||||||||| || ||| |||||| | Sbjct 12256 GAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 12315 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || || ||||| | ||||| |||||| | | || | ||| ||||| Sbjct 12316 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCA 12375 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| ||||||||||| || | || || |||||||| ||||| Sbjct 12376 ACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||||| ||||| |||| |||| ||||| || || | || || || ||||| ||||| Sbjct 13974 TTCCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGAT-TCTTTTTGGATGTTGTAGTCG 14032 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | | |||| |||| ||| |||||||||||||||| || ||| |||||| | Sbjct 14033 GAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 14092 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || |||||| | || | ||| || ||| Sbjct 14093 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCG 14152 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || ||||| ||||| || | || || |||||||| ||||| Sbjct 14153 ACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325559591543021