Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq16010 138 2e-27 seq13386 120 5e-22 >seq16010 Length=816 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| || |||||||| || || | || || ||| | || Sbjct 363 TGCAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCCG 304 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| ||||| ||| ||| ||||| || ||||| |||||| Sbjct 303 ACACAATTGAAAATGTCAAAGCAAAAATTCAAGATAACGAAGGAATCCCACCACATCAAC 244 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||||| || ||| ||||| | | ||||| || | Sbjct 243 AAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACAACA 184 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || ||||||| || | || | |||||||| Sbjct 183 TCCAAAAGGAATCAACACTCCATTTGGTTCTTCGTCTCAGAGGAGG 138 >seq13386 Length=19191 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| || || | || || ||| | | Sbjct 13236 TGCAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCTG 13177 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || || || ||| |||||||| |||||||| || |||| Sbjct 13176 ACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAAC 13117 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||||| || ||| ||||| | | |||||||||| Sbjct 13116 AAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAATA 13057 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || |||| || || || |||| |||||||| Sbjct 13056 TTCAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGAGGAGG 13011 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||| | || ||||||||||| || |||| || ||| | | Sbjct 13973 TGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTCTG 13914 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| ||| || ||| || ||||| || ||||| ||||||| Sbjct 13913 ACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAAC 13854 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||||||||| || |||||||| || ||| | || || | ||||| || | Sbjct 13853 AACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTACAACA 13794 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 13793 TCCAAAAGGAATCTAC 13778 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || ||||| || || || |||| || || | | Sbjct 12424 TGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCTG 12365 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| |||||| ||| |||||||| || ||||| || |||| Sbjct 12364 ATACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAAC 12305 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||||| || || ||||| | | || || || | Sbjct 12304 AAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAACA 12245 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || |||| || || | || | |||||||| Sbjct 12244 TTCAAAAAGAATCAACACTCCACTTGGTTCTTCGTCTCAGAGGAGG 12199 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || |||||||| || ||| | || || ||| | | Sbjct 14201 TGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTCTG 14142 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || ||| || ||||| |||||||| || |||| Sbjct 14141 ATACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAAC 14082 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || |||||||| || ||| ||||| | | || || || | Sbjct 14081 AAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAACA 14022 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | || || || || |||| |||||||| Sbjct 14021 TCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGG 13976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785836613022280