Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq29506 87.8 2e-12 seq33217 84.2 3e-11 >seq29506 Length=33488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||| ||||| |||| || || ||||| || || |||| | ||||||| || || Sbjct 23306 CGTTTACCTCAAATTGGTGACAAATTCGCGTCTCGACATGGAC-AAAAAGGTACAATGGG 23248 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || || ||| |||||| |||||||||||||| || ||| || ||| |||||||| Sbjct 23247 AATTATGTATCGACAAGAGGATATGCCATTTACGGCCGAAGGATTGACACCTGATATTAT 23188 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||||| || | ||||||| | ||||| ||| || |||||| Sbjct 23187 TATTAATCCACATGCTGTTCCATCTCGTATGACAATTGGCCATCTTATTG 23138 >seq33217 Length=34003 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCT 52049 |||||||||||||||||||| |||||||||||||||||| |||| ||| | |||| ||| Sbjct 25703 TATAATGCTGATTTTGATGGAGATGAAATGAATTTACATCTTCCACAAACCTATGAAGCA 25644 Query 52050 ACTGCTGAA 52058 | |||||| Sbjct 25643 AAAGCTGAA 25635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634911150936520