Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq16010 87.8 3e-12 >seq16010 Length=816 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/130 (74%), Gaps = 11/130 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 ||||||| || || || |||||||| |||||||| | ||||| || ||| Sbjct 172 ATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAA 231 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | || | |||||||||| ||| | ||| |||| ||||||||||| |||||||| | || Sbjct 232 AAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTGAATTTTTGCTTTGACAT 291 Query 81760 TTTCAATCGT 81769 ||||||| || Sbjct 292 TTTCAATTGT 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903032230294240