Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq31956 145 2e-29 seq31313 123 6e-23 seq29506 93.3 1e-13 seq32583 87.8 4e-12 seq33217 86.0 1e-11 seq22269 84.2 5e-11 >seq31956 Length=51777 Score = 145 bits (160), Expect = 2e-29 Identities = 328/487 (67%), Gaps = 11/487 (2%) Strand=Plus/Minus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| |||||||||||| | | || | |||| |||| || | |||||| ||||| Sbjct 36625 TCAAATGGTCTTGTTCCAATGCTTCGCGTTTACAACAACACAGCCAGATATGTCGATCAA 36566 Query 110736 GGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 ||||| || | | | || | |||||||| ||||||||||| |||||| | ||||| Sbjct 36565 GGTGGAAACAAACGTCCAGGTGCCTTTGCTATTTATCTCGAACCATGGCATGCCGATATT 36506 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 || |||||| | | || || ||||| || |||||| | ||||| || ||| | Sbjct 36505 TTCGAATTCGTCGCTCTCCGCAAAAACACTGGCCCAGAAGAAGAGAGAGCTCGCGATCTT 36446 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || || | ||| | ||||||| ||||||||||| || || | | | ||| Sbjct 36445 TTCCTGGCTCTTTGGGTCCCAGATTTGTTCATGAAACGCGTCGAAAGAGACGAAGATTGG 36386 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || || ||||| ||| | || || || ||| || | || ||||||| ||| Sbjct 36385 TCGCTAATGTGCCCTTGCGAATGTCAAGGACTCGATGAAGTTTGGGGTGAAGAGTTCGAA 36326 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAA 111032 | |||||| |||||||| ||||| || || | | || || | | | |||| Sbjct 36325 GCTCTTTACACCAAATATGAGAAAGAGGGAAAAGT--GAGAAAAACTGTGAAAGCGAGAA 36268 Query 111033 CTTTGGTTCAAAATCCTTGAATC---ACAAGTTGAAACTGGAACTCCTTATATTTTGTAT 111089 ||| | || ||| ||| ||| |||| ||||||| |||||||| ||| Sbjct 36267 AATTGTGGGAGCAT-GTTGTATCGAATCAAATTGAGACTGGAATGCCTTATATCACATAT 36209 Query 111090 AAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGT-CTAGTAA 111148 |||||| |||||| ||| |||||||| ||| | ||||||||||| | || | || Sbjct 36208 AAAGATGCGGCTAATCGAAAAACTAATCAACAAAATATTGGAACAATTAAATGCTCG-AA 36150 Query 111149 TTTGTGC 111155 ||||||| Sbjct 36149 TTTGTGC 36143 >seq31313 Length=25367 Score = 123 bits (136), Expect = 6e-23 Identities = 320/477 (67%), Gaps = 38/477 (8%) Strand=Plus/Plus Query 279059 TTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAA 279118 || || || ||||||||||| || ||||||||| |||||| || |||||| || Sbjct 20647 TTCTAGGGAATTCCAAAACTCGAAGATGCAAACGATGCTGGAACCAAAAACTCTCAACAA 20706 Query 279119 TGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCT 279178 ||| | || | |||||||||||||||||||| ||| |||| || |||||||| | Sbjct 20707 TGTACATTGATCCTTACTGAGGGAGATTCTGCAAAAACACTTGCAGTTTCTGGTTTAGCA 20766 Query 279179 GTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGT 279238 ||| |||| | ||||||||||| |||||||| | | |||||| | | |||| ||| Sbjct 20767 GTTGTTGGAAGAGATAAATATGGAGTATTTCCACTTCGTGGTAAACTTTTGAATGTTCGA 20826 Query 279239 GATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAAT 279298 ||| || | | || ||| | || || |||||| |||| | Sbjct 20827 GATGGAA---------------ATATGAAACAAATTGCTGACAACGCTGAA---ATTACT 20868 Query 279299 TTAA--AACAA-ATATTGGGATTAGAGCA-AGGTAAAAA----ATACA-AAGAT-ACATC 279348 || | ||| || ||||||||| || | | | ||||| | ||| ||||| | || Sbjct 20869 GCAATGATCAAGATTTTGGGATTACAGTATAAGAAAAAATATGAGACAGAAGATGATTTC 20928 Query 279349 AAG--TTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCAC 279406 ||| ||| ||||||| ||| |||| | || | || |||||| |||||| || Sbjct 20929 AAGACTTTGAGATATGGAAAAGTTATGGTAATGGCTGATCAAGATCAGGATGGATCACAT 20988 Query 279407 ATTAAAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCA-GAATTGTTGAATCAAAA 279465 || |||||| | | | |||| ||| || |||||||||| || || || | ||| Sbjct 20989 ATCAAAGGACTTGTTATCAATTTTGTTCATCATTTCTGGCCATCGCTTATTCAA-CGAAA 21047 Query 279466 TTTTGT--AAGTGTGTTTCA-AACACCAATTATTAAGGCAACTAAAGGTAAAAAAGA 279519 ||||| ||| |||| ||||||||| | || || || ||||| ||| |||| Sbjct 21048 CTTTGTTGAAG---AATTCATTACACCAATTGTGAAAGCTACAAAAGGAAAAGAAGA 21101 >seq29506 Length=33488 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 352851 TTGGAGACAAGTTCGCTTCTCGATCTGCTCAAAAAGGAACAATTGGAATGTTGCTCAGTG 352910 |||| ||||| ||||| |||||| || |||||||| ||||| ||||| || | Sbjct 23293 TTGGTGACAAATTCGCGTCTCGACATGGACAAAAAGGTACAATGGGAATTATGTATCGAC 23234 Query 352911 AAAAGGATATGCCTTT--CGACAAAAATGGCTTAAAACCTGACATTATTATTAATCCAAA 352968 || |||||||||| || || | || || || | |||||| ||||||||||||||| | Sbjct 23233 AAGAGGATATGCCATTTACGGCCGAA--GGATTGACACCTGATATTATTATTAATCCACA 23176 Query 352969 TGCGATTCCCTCTAGAATGACAAT 352992 ||| |||| ||| | |||||||| Sbjct 23175 TGCTGTTCCATCTCGTATGACAAT 23152 >seq32583 Length=15821 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 || ||| | |||||||| ||| || | || ||||| ||||||| | |||||| Sbjct 7584 TTCCCACTCAAACATCATACAATTTGGGAGTTTTACAAGAAGGCTGTTGCATCATTCTGG 7525 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAAT 131554 ||||||||||| | ||| || |||||||| | |||||||||||| | | | || Sbjct 7524 ACTGTTGAAGAAGTTGATTTGGGAAAAGATATGAAAGATTGGGAAAAAATGAACGGAGAT 7465 Query 131555 GAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTATT 131614 ||| || |||||||| ||| | ||||| ||||| | |||||| ||||| | | Sbjct 7464 GAACAATTCTTTGTTTCTCGTGTTTTGGCATTTTTCGCTGCTTCTGATGGAATTGTCAAT 7405 Query 131615 GAAAATCTTG 131624 ||||| |||| Sbjct 7404 GAAAA-CTTG 7396 >seq33217 Length=34003 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 305414 TTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATG 305473 || |||| | |||||||||| ||||||||||| |||||||||||||||||||||||| | Sbjct 25727 TTCAATGAATGTGCTTGTACTCCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTA 25668 Query 305474 CATGTACCTCAA 305485 ||| | || ||| Sbjct 25667 CATCTTCCACAA 25656 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 305408 TTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAAT 305466 |||| |||| |||| | ||||||| || || |||||||| |||||||||||||||||||| Sbjct 26053 TTTCAGATTCAATGAATGTGCTTGCACACCATATAATGCTGATTTTGATGGAGATGAAAT 25994 Query 305467 GAATATGCATGTACCTCAA 305485 |||| ||||| | || ||| Sbjct 25993 GAATTTGCATCTCCCACAA 25975 >seq22269 Length=3279 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 167211 AAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTC 167270 || |||||| |||| || || || |||| ||| | || || || ||||||||| Sbjct 457 AACGAGCACAACAAATTTTCATCAACATTCATAACAGCTCCCGCGTTGTCGAATTCACCA 516 Query 167271 GCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACCA 167330 |||||| || ||||| ||||||||||| ||| |||| || |||||||||||| Sbjct 517 CAATAATTAGGGGCTGAGAATACAGTAACCAATCCACGACGTCCGAAAAATTCATAACCA 576 Query 167331 TCTTCAACAAC 167341 ||||||||||| Sbjct 577 TCTTCAACAAC 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186302500537199