Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13386 154 3e-32 seq16010 114 3e-20 seq30935 93.3 1e-13 >seq13386 Length=19191 Score = 154 bits (170), Expect = 3e-32 Identities = 157/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| | || |||||||| ||||| |||||||| ||| ||| ||| Sbjct 13743 CAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCGGAC 13684 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||||||| |||||||| |||||||||||| || ||| || Sbjct 13683 ACAATTGAAAATGTCAAAGCAAAA-ATTCAAGATAAAGAAGGAATTCCACCAGACCAACA 13625 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || || |||||||| || |||||||||||||| ||| | |||| |||||| | Sbjct 13624 AAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTACAACAT 13565 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||| || || ||| Sbjct 13564 CCAAAAAGAGTCCACCCTCCAC 13543 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| | || |||||||| |||||||||||||| ||| |||||| Sbjct 14199 CAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTCTGAT 14140 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||||||| || ||| ||| Sbjct 14139 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAACAA 14080 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||| || |||||||||||||| || | |||| |||||| || Sbjct 14079 AGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAACATC 14020 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || || |||||| | ||||||||| Sbjct 14019 CAAAAAGAATCAACACTTCACTTGGTTTTGAGA 13987 Score = 134 bits (148), Expect = 3e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| ||||| |||||||| ||| ||||||||| | ||| Sbjct 13223 CAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCTGACACCATTGAAAA 13164 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| |||||||||||| || ||| |||||| | ||||| Sbjct 13163 TGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAACAAAGATTGATCTT 13104 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || ||||||||||| || || | | ||||| || | || || || || Sbjct 13103 CGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAATATTCAAAAGGAATC 13044 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || ||| | ||||||||| Sbjct 13043 AACACTCCACTTGGTTTTGAGA 13022 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| |||||||| ||||| | ||||| ||| ||||||||| ||||| Sbjct 13960 CAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTCTGACACCATCGAAAA 13901 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| || |||||||| || || ||| | || || | Sbjct 13900 TGTCAAAGCTAA-GATCCAAGACAAGGAAGGAATCCCACCAGATCAACAACGTCTCATTT 13842 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | |||||||| || |||||||||||| | || ||| | ||||||||| |||| || || | Sbjct 13841 TTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTACAACATCCAAAAGGAAT 13782 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| |||||| | ||| | | ||||| Sbjct 13781 CTACCCTTCACTTGGTTCTCCGTCTTCG 13754 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| ||||| |||||||| ||| |||||||| ||||| Sbjct 12183 CAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTCTGACACCATCGAAAA 12124 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || |||||||| || || ||| | || ||||| Sbjct 12123 CGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAACAACGTCTCATCTT 12064 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || ||||||||||| | ||| | |||| |||||| |||| || || || Sbjct 12063 CGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACAACATCCAAAAGGAATC 12004 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| | ||| | | ||||| Sbjct 12003 GACTCTTCATTTGGTTCTTCGCCTTCG 11977 Score = 120 bits (132), Expect = 7e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| | || ||||| || ||||| | ||||| || |||||| Sbjct 12422 CAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCTGAT 12363 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| |||||||| ||||||||||| || ||| || Sbjct 12362 ACCATCGAAAATGTCAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCACCAGACCAACA 12304 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | |||||||||||||| || |||||||| ||||| || | |||| |||||| | Sbjct 12303 AAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAACAT 12244 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || ||||| || || || ||| | ||| Sbjct 12243 TCAAAAAGAATCAACACTCCACTTGGTT 12216 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| |||||||||||||| ||| ||||||||| ||||| Sbjct 13504 CAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTCGAAGCTTCTGACACCATCGAAAA 13445 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||||| ||||| || |||||||| || ||| |||||| | |||| Sbjct 13444 TGTCAAAGC-CAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAACAAAGATTGATCT 13386 Query 206303 TCGCCGG 206309 |||| || Sbjct 13385 TCGCTGG 13379 >seq16010 Length=816 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||| ||||| | ||||| ||| ||| |||||| | ||| Sbjct 350 CAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCCGACACAATTGAAAA 291 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||||||| |||||||| || |||||||| || | |||||| | || | Sbjct 290 TGTCAAAGCAAAA-ATTCAAGATAACGAAGGAATCCCACCACATCAACAAAGATTGATTT 232 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | |||||||| || |||||||||||||| ||| | | ||||||||| |||| || || | Sbjct 231 TTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAAAAGGAAT 172 Query 206363 CTACTCTTCA 206372 | || || || Sbjct 171 CAACACTCCA 162 >seq30935 Length=6295 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || || || | ||||| || || ||||| ||||| Sbjct 1282 CAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCGGACACCATCGAAAA 1341 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| || |||||||| || || |||||| | |||| Sbjct 1342 TGTCAAAGCCAA-GATCCAAGACAAGGAAGGAATCCCACCAGATCAACAAAGATTGATCT 1400 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||| || | || |||||| | ||| | |||| |||||| |||| || |||| Sbjct 1401 TCGCCGGAAAACAACTCGAGGATGGACGTACTCTTTCCGACTACAACATCCAAAAGGAGT 1460 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || |||||| | ||| | | ||||| Sbjct 1461 CGACCCTTCACTTGGTTCTCCGTCTTCG 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181312646970839