Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq17077 134 1e-26 >seq17077 Length=1461 Score = 134 bits (148), Expect = 1e-26 Identities = 347/518 (67%), Gaps = 48/518 (9%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCT-CTTCTCTCCACGAAGAA 142301 ||||| | ||||| || ||| ||||||| | || | |||| || ||| |||| ||| Sbjct 925 TTCGGCCGCCAGATCCGCTTCGATCTGGC-CGAGTCGTTCCCGCTGCTCACCACCAAGCG 983 Query 142302 GCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACAT 142361 | |||| | || ||| || |||| || || |||||||| ||||| | |||| Sbjct 984 GGTGCACTTCAAATCGGTCGCGATCGAGCTGCTCTGGTTCCTGCGCGGCGAGAGCAACAC 1043 Query 142362 CAAGTATCTTCAC-GATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 ||||| || |||| || || ||| | |||||||| || ||||| || || | ||| Sbjct 1044 CAAGT-TCCTCACCGACAACGGCGTGACCATCTGGGACGAGTGGGCCGACGCGAGCGGCG 1102 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 |||| || || ||||||||| ||||||| |||||| ||| | || || || | Sbjct 1103 ACCTGGGCCCCGTCTACGGCGTGCAGTGGCGCTCCTGGCCGACGC-CG-----GCGGGCG 1156 Query 142481 ATGACGTCA--CAGA---CGAACC-GATCGATCAGATCCGCCGGATCATTACTGACTTGA 142534 | || || |||| || | |||||| |||||||| || | | |||| | Sbjct 1157 AGCACATCGACCAGATCTCGCAGGTGATCGAGCAGATCCGTTCGAACC---CGGACTCG- 1212 Query 142535 AGAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACG 142594 || |||| ||||||| ||||||||||| || || ||||| Sbjct 1213 -----------------CGCCGTCTCATCGTCTCCGCGTGGAACGTGGCGGAGCTCGACC 1255 Query 142595 ACATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCG 142652 | ||||| || | ||||| ||| | | ||||| ||| |||| | ||| | ||| Sbjct 1256 AGATGGCGCTCGCACCGTGCCACGCGTTCTTCCAGTTCTACGTGG--CCGACGGCAAG-- 1311 Query 142653 TCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACAT 142712 || || |||||||| || ||||| || || ||| ||||||||| || |||||||| || Sbjct 1312 -CTCTCGTGCCAGCTCTACCAGCGCTCTGCCGACATGTTCCTCGGGGTGCCGTTCAATAT 1370 Query 142713 TGCTTCGTACGCGCTTCTCACACAGCTCATTGCTCGCG 142750 || || |||||||| || || ||||| || ||||| Sbjct 1371 CGCCTCCTACGCGCTGCTTAC---GCTCA-TGGTCGCG 1404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500289246841840