Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq30935 98.7 9e-16 seq13386 84.2 2e-11 >seq30935 Length=6295 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | ||||| ||||| |||||||||||| | ||||| ||| || Sbjct 1477 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTC 1418 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| ||||| |||| |||| | | ||||||||||| || || ||||| || || Sbjct 1417 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 1358 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || ||| | | ||| | || || | | ||| ||||||| || | || || Sbjct 1357 GATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTT 1298 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| |||||||| || | ||| || ||||||||| Sbjct 1297 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 1264 >seq13386 Length=19191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||||||||| |||||||||||| | || | |||||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| |||| | | || | | ||||| ||||| || || ||||||||||| | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 |||||| ||| | | ||| | || || | | || ||||| | || | ||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | || || ||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | |||| ||||||||||||||||||||| | ||| | ||||| Sbjct 12216 AACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTC 12275 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| |||| |||| | | ||||| ||||| || || |||||||| || Sbjct 12276 CAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG 12335 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | | ||| ||||| | || | || || Sbjct 12336 AATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTT 12395 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| |||||| | || || ||||| Sbjct 12396 TCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476411267559240