Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq31956 264 2e-65 seq32583 113 6e-20 >seq31956 Length=51777 Score = 264 bits (292), Expect = 2e-65 Identities = 644/964 (67%), Gaps = 25/964 (3%) Strand=Plus/Plus Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTT- 68936 |||||||| || |||||| |||| ||| ||| | ||| | || | || ||| || Sbjct 35685 TTCCAATCACATTGATCAGTTGGTGTAACTCCCCACATATCAAACTGCAAAACTCCCTTC 35744 Query 68937 ---ACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACA 68993 ||| | | ||| | |||||| ||| | ||| | ||| ||| | ||||| Sbjct 35745 GAAACTGGACT----TCCGTCATATGTGGAATAGGTTCCATAAAGTTTCGCTTGCTCACA 35800 Query 68994 ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 69053 |||| | || |||||| | ||||||||||||||||||||| || || | |||| || Sbjct 35801 ACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTCAAATCTCTGGC 35860 Query 69054 TTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCC 69113 || || | ||||||||| | ||| || || |||||||||||| || || || Sbjct 35861 AGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAATCCTTGTACACC 35920 Query 69114 AATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATT 69173 | || || || | ||| | | |||||||| ||| ||||| |||| ||||||||||| Sbjct 35921 TAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACTGGATAATAATT 35980 Query 69174 AATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAG 69233 || || || || || || | |||| | | | | || || ||||||| Sbjct 35981 GATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCAGCGAGTTTGAC 36040 Query 69234 AAAATCAAA--TCGTC-CATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACA 69290 ||||| || || | || | ||||| ||||| || | ||||| | |||||| Sbjct 36041 GAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGATGCCAAATTACA 36100 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 ||| || || |||| | | | | | || || || || || || | ||| ||||| Sbjct 36101 AACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAATTCGAGCATTT 36160 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 || || || | |||||| |||||| | ||| ||| || || || || ||| | Sbjct 36161 AATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTATATGTGATATA 36220 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT--TTCCAAACGACCCTAGCATTT 69468 || | ||||| ||||| ||| ||||||| | || | ||| | || || || Sbjct 36221 AGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTCCCACAATTTTCTCGCTTTC 36278 Query 69469 ATTACGGTCTTGTAACGCTTC--TCTTTTTCATATT--GTGTATATAGCCGTTCGAATTC 69524 | | | || | || ||| ||||| ||||||| ||||| | ||| |||||| || Sbjct 36279 ACA--GTTTTTCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAGAGC--TTCGAACTC 36334 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 || |||||||| ||||| | ||| ||||||| || ||||| | ||||| | || Sbjct 36335 TTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAGCGACCAATCTTC 36394 Query 69585 ATCATCCTTA-ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 || || || || |||||||| || | ||| || | ||||||||| | || ||||| | Sbjct 36395 GTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCAGGAAAAGATCGC 36453 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 | ||| | |||||| || || ||||| ||| ||| || || | |||||| | Sbjct 36454 GAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATTCGAAAATATCGG 36513 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 |||||||||||| ||||| || || | | | || || ||||| ||||| || ||||| | Sbjct 36514 CATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTCCACCTTGATCGA 36573 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 |||||||| ||||| || || || | ||||| |||| || |||||| ||| | || | Sbjct 36574 CATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCATTTGATGTTCCGT 36633 Query 69824 TTGT 69827 | || Sbjct 36634 TGGT 36637 Score = 179 bits (198), Expect = 5e-40 Identities = 305/437 (70%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| | | ||| ||||| || || |||| || |||| || |||||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| ||| | || ||||||||| | || ||||||||||||| ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTC-TTTTGAGGAATTTC 68573 ||||| ||||||||||| | |||||| ||||| | ||||| ||| ||||| | ||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAAT-CTCTTTTTGCGATATTTC 35325 Query 68574 CCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTC-GTATTTTGAATGGA 68630 ||||| || || | | || |||||| ||| ||||| | || |||||||||| || Sbjct 35326 CCAAACTGTTTTGTACAACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTGAATCGA 35385 Query 68631 TCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 |||| || || | | ||| || || ||||||| ||| ||| || || Sbjct 35386 TCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACCAA 35445 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | | | | | ||| ||||| || ||||| || || ||||| || || | |||| || Sbjct 35446 ATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAATA 35505 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 ||||| || |||||||| | || ||||| ||||| || |||||||| || || || Sbjct 35506 GATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAGC 35565 Query 68811 AGTTGGCATAGGTGCCA 68827 ||||||||| || |||| Sbjct 35566 AGTTGGCATTGGAGCCA 35582 Score = 178 bits (196), Expect = 2e-39 Identities = 423/633 (67%), Gaps = 6/633 (1%) Strand=Plus/Plus Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| ||||| || || |||| ||||| | ||||| |||||| || || || || || Sbjct 36736 ACCGATTCCACCAGCATTTTTCGAGATCAATGCACATTGTTTCAGAGTATCGTAGATTCC 36795 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGT 69992 | || |||||| |||| | || | ||| || |||||||| | | ||| Sbjct 36796 CAAGATCGAATCATCGCTCATTGTTAGCAAAAAGCAAGATGACATTTGTGGCCGACGAGT 36855 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 ||||| || || ||||| || || || || || | || | || || | |||||||| Sbjct 36856 TCCCGAGTTGAACAATGTTGGCGAAGCATGTGTCATATATCTCTCCGACATGAGATTGTA 36915 Query 70053 TGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||| || |||| || | ||| | | | |||||||| | | || | |||||||| Sbjct 36916 GGTTTCGATGGCTGCATCAACATCGTCTCCG-TGAATTCCAACAGAAACTCTCATCAACA 36974 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | || || || ||||| || ||| || || |||||||| || || ||| ||||||||| Sbjct 36975 TTTGTTGTGGGCGTTCGACGATTTGATCATCGATTTTCAAAAGATACGATCTTTCCAGAG 37034 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 |||| || ||||| || ||||||| | || | ||||||| || | || || |||| Sbjct 37035 TTTTGAAACCAAAGAAGGTGTATGAGTAATCGCGATCGTAAACGATGGCTGAGTTAAGTT 37094 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGA--GATAATCGGAGATCGTTT 70289 |||| || ||| ||| | ||| ||| | ||| || || ||||| ||| Sbjct 37095 TATCTGCATTTTTCATAATTGTAT-TGTAA-GTTTCTTGACTAATCATTGGAGAATGTTG 37152 Query 70290 ACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttt 70349 || | ||||| | | | | | ||| || ||| || ||| || | ||| || Sbjct 37153 TCCGGTCAAAGGATGATGGAATTCGTACAAAGTTTTCATCACTTCAGAGAAAACTTTGTT 37212 Query 70350 tGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 ||||| |||||| || || || | || ||||| || || |||| |||||| || ||||| Sbjct 37213 TGTTTTCTTGTGCAAGTTAGAAACAGCAATTCTTGCAGCAAGAAGAGCATATTCTGGATG 37272 Query 70410 TTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAAC 70469 ||| || || | ||| || |||| || || | |||| ||||| | |||||| || Sbjct 37273 TTGAGTTGTCATTGAAGCGGCGGTTTCAGCGGCAAGATTATCCAATTCAACAGTTGTTAC 37332 Query 70470 TCCGTTATATAGCCCTTGAATAACTTTCATGGC 70502 || || || | || || ||||| ||||| Sbjct 37333 ACCTTTGTACAATCCACTGATGACTTTGATGGC 37365 >seq32583 Length=15821 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| |||||||| || ||||||||| ||| || ||||||||||| ||| | || || Sbjct 7395 CCAAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAA 7454 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | ||| |||||| ||| ||| | ||| || || ||||||||| | ||| |||| Sbjct 7455 AGAATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTT 7514 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 ||||| | ||||| || || || | ||||| ||||| | | ||| || | ||| || Sbjct 7515 CTTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTT 7574 Query 40179 GTATTGGAAAAATAACAAATCTATT 40203 | ||| |||||||| |||| ||| Sbjct 7575 TGAGTGGGAAAATAACGAATCGATT 7599 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 39266 ATTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATC---TTCTTGTGACATAACTCCC 39322 ||| |||| |||||| | || | | ||| ||| || ||||| || |||||| || Sbjct 6426 ATTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCA 6485 Query 39323 ATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 39382 | |||| ||||| ||| ||||||||||| ||||| ||||| || || | ||||||| Sbjct 6486 GGTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATA 6545 Query 39383 TTTTCCATGAAATCAAACGGATT 39405 |||||||||||||| || ||||| Sbjct 6546 TTTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686620650344760