Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq17077 100 1e-16 >seq17077 Length=1461 Score = 100 bits (110), Expect = 1e-16 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 21588 CATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTG 21647 |||||||||||| ||||| | | |||| ||| ||||| |||| || | ||||| Sbjct 1071 CATCTGGGACGAGTGGGCCGACGCGAGCGGCGACCTGGGCCCCGTCTACGGCGTGCAGTG 1130 Query 21648 GCGCAGCAT-CCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGC 21706 |||| | || | ||| | || || ||||||||||| | | ||| |||| Sbjct 1131 GCGCTCCTGGCCGACGCCG-GCGGGCGAGCACATCGACCAGATCTCGCAGGTGATCGAGC 1189 Query 21707 TGCTGCTGAACGA-CCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAG 21765 | | | | ||| ||||||| ||||| ||||||| || ||||||||||| ||| Sbjct 1190 AGATCC-GTTCGAACCCGGACTCGCGCCGTCTCATCGTCTCCGCGTGGAACGTGGCGGAG 1248 Query 21766 CTCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21811 |||||||||||||| || |||||||||| ||| | |||||||||| Sbjct 1249 CTCGACCAGATGGCGCTCGCACCGTGCCACGCGTTCTTCCAGTTCT 1294 Score = 82.4 bits (90), Expect = 4e-11 Identities = 105/142 (74%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 21955 TGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGC 22014 ||| | ||||| |||||| || ||||||||||| || ||||| ||||| |||||| | Sbjct 1318 TGCCAGCTCTACCAGCGCTCTGCCGACATGTTCCTCGGGGTGCCGTTCAATATCGCCTCC 1377 Query 22015 TACGCGCTGCTGACGCACCTCATGG-CGGCCA--CGGTCGGCATGCAGGCCGAGAAGTTC 22071 ||||||||||| ||| ||||||| || || | ||| | || ||| ||||| Sbjct 1378 TACGCGCTGCTTACG---CTCATGGTCGCGCAGCAGACCGGGCTCGAGCCCGGCGAGTTC 1434 Query 22072 ATCTGGTCTGGCGGTGACTGCC 22093 ||||| | ||||| ||||||| Sbjct 1435 GTCTGGACCGGCGGCGACTGCC 1456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236546412857249