Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq32252 138 9e-28 >seq32252 Length=5867 Score = 138 bits (152), Expect = 9e-28 Identities = 262/380 (69%), Gaps = 18/380 (5%) Strand=Plus/Plus Query 19465 TATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA--- 19521 ||||| || |||| ||| |||||| || || ||||||||||||||||||||| Sbjct 1490 TATGTTGGAGAATCCGAATCAAATGTTCGTAAATTATTTGCTGACGCTGAAGAAGAATGG 1549 Query 19522 CAAAAACGTTTAGGGCGCAAAAGTTCTT---TGCACATTATAATACTAGATGAATTGGAC 19578 | | | || || ||||| |||| | || || || || | |||||| | || Sbjct 1550 CGTAGATGT----GGAGCAAA--TTCTGGACTTCATATAATTATTTTCGATGAAATTGAT 1603 Query 19579 GCAATCTGTAAGCAAAGAGGTTC--TGG-TGTAAATGG---AGTACATGACACTGTTGTC 19632 |||||||| || ||||||||||| ||| || || | ||| |||||||| ||||| Sbjct 1604 GCAATCTGCAAACAAAGAGGTTCAATGGCTGGAAGTTCTTCAGTTCATGACACAGTTGTA 1663 Query 19633 AATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGC 19692 |||||| | | |||||| | || |||||| | ||| ||||||||||| | |||||||| Sbjct 1664 AATCAATTATTATCAAAAATGGATGGTGTTGAACAATTGAATAATATTCTTGTTATTGGA 1723 Query 19693 ATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATA 19752 ||||| ||| || || | || || || | || |||| ||| | || ||| | Sbjct 1724 ATGACAAATCGAAAAGATATGATTGATGAAGCACTTTTGAGACCTGGTAGATTAGAAGTT 1783 Query 19753 AAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812 | || ||| | ||| | |||||| |||| | | ||||||| || || |||||| Sbjct 1784 CAAATGGAAGTATCATTAGCTGATGAAGCTGGAAGACTTCAAATTTTGAAAATTCATACA 1843 Query 19813 TCAACCATGCGACAAAATAA 19832 ||| ||| || || |||| Sbjct 1844 GCAAGAATGAGAGAATATAA 1863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397293440371795