Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq13386 102 7e-17 seq30935 96.9 3e-15 seq31956 84.2 2e-11 >seq13386 Length=19191 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| || ||||| || || |||| | ||||| Sbjct 13766 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCC 13825 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| ||||| |||||||||| |||||||| || || | || || || || | Sbjct 13826 AATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 13885 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | |||| | ||||| | ||||||||||| || || || | ||| Sbjct 13886 ATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTT 13945 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 13946 CCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | ||| ||||| || | || || |||||||| || ||||||||| Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| | ||||| |||||| | || | | ||||| || || || Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | | || | || || | ||||| ||| Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||| || |||| |||||| |||||||||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||||||||| ||||||||| | | | | ||||||| Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| |||||| | || | | ||||| || || || | || ||||| || Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 12336 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | |||| | || || | || |||||||| || || || | || Sbjct 12337 ATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTT 12396 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||| ||||||||||||||| Sbjct 12397 CCGGTCAAAGTTTTGACAAAGATTTGCATA 12426 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | ||| ||||| || | || || || ||||||||||| || || Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| | ||||| |||||| | || | | ||||| || || || Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||||| || | |||| | ||||| | ||||| ||| Sbjct 13131 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACT 13190 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| |||||| || || || || || || ||||||||| Sbjct 13191 TCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATA 13238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||||||| | | | | ||||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| ||||| |||| | | ||||| || || || | || |||||||| Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | |||| | ||||| | ||||||||||| | || || | ||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||||| ||||||||||||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCATA 13747 >seq30935 Length=6295 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || ||||| || ||||||||| Sbjct 1494 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAA 1435 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || ||||| ||||| |||||| | || | | |||||||| || || Sbjct 1434 AGAGTACGTCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGG 1375 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| ||| | |||| | ||||| | ||| || ||| Sbjct 1374 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACT 1315 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 || || || || | || ||||||||||| || || ||||||||||| ||| |||||| Sbjct 1314 TCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACTG--AAAAAT 1257 >seq31956 Length=51777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 224/340 (66%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 130549 TTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTT 130608 ||| ||||||||||| ||||| || | ||||||||||| || | || ||| | Sbjct 35260 TTGTGATTGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGA 35319 Query 130609 CATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTG 130668 || |||||| | || ||||| | || | || | | || || | |||| ||| Sbjct 35320 TATTTCCCAAACTGTTTTGTACAACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTG 35379 Query 130669 AA-CGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTACAATCCAAGCT 130727 || || | || ||| |||| || | | || |||| | ||| | |||||||| | Sbjct 35380 AATCGAT-CCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTT 35438 Query 130728 GTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTC 130787 || | ||| || | |||||| ||| | ||||| ||||| |||| || || |||| Sbjct 35439 CAACCAAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTC 35498 Query 130788 TAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTG 130847 | || || ||| ||| | ||||||| || || ||||| |||| ||||| |||| Sbjct 35499 GAGAATAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTG 35558 Query 130848 TAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACG 130887 | | || || ||||| |||| | |||||||| || Sbjct 35559 TGGAAGCAGTTGGCATTGGAGCCATGAGAAGAGAATTCCG 35598 Score = 82.4 bits (90), Expect = 6e-11 Identities = 187/278 (67%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 131604 GACATTCGCTGGGACACATTAGCGACCACACGCCGT-TCTGTTCAACTCGCTTCATAAAC 131662 ||||||||| || |||||||||||||| | ||| ||| ||| || || ||||| ||| Sbjct 36361 GACATTCGCAAGGGCACATTAGCGACCAATCTTCGTCTCT-TTCGACGCGTTTCATGAAC 36419 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 ||||| || ||||| | || || ||||| | |||| | | ||||||| || | Sbjct 36420 AAATCTGGGACCCAAAGAGCCAGGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTG 36479 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 |||| | | | || || ||||| || |||||||| ||||| | ||| | || Sbjct 36480 TTTTTGCGGAGAGCGACGAATTCGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCA 36539 Query 131783 ATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839 | || ||| || || || ||||||| |||| | | |||||||||| ||| Sbjct 36540 AAGGCACCTGGACGTTTGTTTCCACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACG 36599 Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT 131877 || | ||| || | | ||| || | |||| ||||| Sbjct 36600 CGAAGCATTGGAACAAGACCATTTGATGTTCCGTTGGT 36637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424760601697608