Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq31956 118 1e-21 >seq31956 Length=51777 Score = 118 bits (130), Expect = 1e-21 Identities = 287/430 (67%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 || ||||| || ||||| | |||| |||||| |||| | ||||||||| | | | | Sbjct 35165 TAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCG 35224 Query 117903 GAGAGGGTTGGACTTTCCAT--GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTC 117960 | |||| | |||| ||| | |||| |||||| |||||||| ||||| || Sbjct 35225 GCATAACTTGGTTTAGCCATATGAATA--TTCAAACTTTGTGATTGATCAATGAAAGCTC 35282 Query 117961 CCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGA 118020 | ||||| || ||||| ||||| | || || | |||||||| || || |||| | Sbjct 35283 CGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACA 35342 Query 118021 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCA 118080 | || || ||| ||| || | | |||||||| || |||||| || || | | Sbjct 35343 ACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTGAATCGATCCATT-GC--TGGCAA 35399 Query 118081 TGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 | | ||| |||||||| | ||| | |||| | | ||||| || | || Sbjct 35400 TCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAAT 35459 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 | |||||||| || || || | | |||| ||||||||||| |||| Sbjct 35460 GTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGT 35519 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 |||| |||| |||||||||| || | |||||| |||||||| || || ||||| || | Sbjct 35520 ATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAG 35579 Query 118258 CCATGAGAAG 118267 |||||||||| Sbjct 35580 CCATGAGAAG 35589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618175774164040