Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq31956 136 5e-27 seq30640 82.4 9e-11 >seq31956 Length=51777 Score = 136 bits (150), Expect = 5e-27 Identities = 290/428 (68%), Gaps = 4/428 (1%) Strand=Plus/Minus Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 ||| |||||||||||||||||||| || ||||| || |||||| | || || ||||| | Sbjct 35590 TCTTCTCATGGCTCCAATGCCAACTGCTTCCACAGCTCAAATCCTCGGAAACAATGAGTC 35531 Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630 ||||||| ||||| | || |||||| || | | | || || || || Sbjct 35530 AATTGAACCATACACTTCCAATATCTATTCTCGACGTGTTTTGTCTGGCGATTTCCAAAT 35471 Query 105631 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 105690 |||||| ||| | || | || | || |||| | ||| | |||||||| Sbjct 35470 TGTCAATCCACATTTGTTGAAGGATTTGGTTGAACTTGGATTATGGGATGATGATATGAA 35411 Query 105691 GGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAA 105749 ||| || | | ||| ||| || ||||||||||||| | ||||||| ||||| Sbjct 35410 AAATCGATTGATTGCCAGCAA-TGGATCGATTCAAAATATTGAACAAATTCCAACTGAAA 35352 Query 105750 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 105809 | || |||||||| |||||||||||||| | || || | ||||| ||||| | Sbjct 35351 TCAAAGAGTTGTACAAAACAGTTTGGGAAATATCGCAAAAAGAGATTATTGAGATGGCTG 35292 Query 105810 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAA 105869 ||||||| || |||||||||||| |||||| ||||| | |||| | |||| Sbjct 35291 CAGATCGCGGAGCTTTCATTGATCAATCACAAAGTTTGAATATTCATATGGCTAAACCAA 35232 Query 105870 -CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGG 105928 ||| || | || | || ||||| | || ||||||||||||| | || || || Sbjct 35231 GTTATG-CCGCGATCACATCAATGCATTTCTATGGTTGGAAGAAGGGATTGAAGACTGGA 35173 Query 105929 ATGTATTA 105936 |||||||| Sbjct 35172 ATGTATTA 35165 >seq30640 Length=8310 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| |||||||| |||||||||||||| |||| |||||| ||| | ||||| || Sbjct 2129 TATGGCCGTGTTGCTCCACGATCTGGTCTTGCTGCCAAACATTTCATCGATGTTGGAGCC 2070 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAA 154215 |||||||||||| ||| || || ||| | ||||| || | ||||| Sbjct 2069 GGTGTTGTTGATAGCGATTATCGCGGAGAATTGAAAGTTCTTTTGTTCAA 2020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583016129385160