Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17725 95.1 1e-14 >seq17725 Length=1166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 166345 CATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGATTAT 166404 ||||||| || ||| || || ||||||||||| || ||| || || | | | | || Sbjct 1047 CATCGAGGTCGCTCCGCTCGCCTACATGCGCGGGCGCACGCTCAACGAGTCGTTCGTGAT 988 Query 166405 CGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGACCCGGATCGG 166464 | || ||| ||||||| |||| || | |||||||||||| | || ||||| |||| Sbjct 987 CCTCGACGAGGCGCAGAACACGACCCCCGAGCAGATGAAGATGTTCCTCACCCGCCTCGG 928 Query 166465 GGAAGGTTCGAAGATGATCGTCGCGGGTGACACGGCCCAG 166504 | |||||||||||| |||| |||||||| | ||||| Sbjct 927 CTACGGTTCGAAGATGGTCGTGACGGGTGACGTGACCCAG 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548294700702960