Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028676.1 Length=149218 Score E Sequences producing significant alignments: (Bits) Value seq17077 82.4 7e-11 >seq17077 Length=1461 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 119776 ATGTGAGTCAGAAGAGCGTACGACGCGATGTTGAACGGAAGACCGAGGAACACATCGACT 119835 ||| | || || || ||||| || ||||| |||||||| | |||||||||| ||| | Sbjct 1397 ATGAGCGTAAGCAGCGCGTAGGAGGCGATATTGAACGGCACCCCGAGGAACATGTCGGCA 1338 Query 119836 GACCTCTGGTTCCAGATG-CACGAGAGCTTCTTGTTTCGTACGTAGAACTGGAAAGAGTA 119894 || | ||||| || || ||||||||||| || |||||||||||||| | Sbjct 1337 GAGCGCTGGTAG-AGCTGGCACGAGAGCTTGCCGTCGGCCACGTAGAACTGGAAGAACGC 1279 Query 119895 GTGACACGGAGGAAGAGACATCGATTCGATCTCAGGGACGTTCCATGCAGAAACCATGTG 119954 ||| ||||| | || | |||| |||| ||| | |||||||| || || || ||| | Sbjct 1278 GTGGCACGGTGCGAGCGCCATCTGGTCGAGCTCCGCCACGTTCCACGCGGAGACGATGAG 1219 Query 119955 GCGCCGACCGTGAGGATCCTTCAGGATAGATTCGATGACGTTATCGATCTGGTCGATGT 120013 || || || || | | |||| ||||| || | |||||||||||||| Sbjct 1218 ACGGCGCGAGTCCGGGTTCGAACGGATCTGCTCGATCACCTGCGAGATCTGGTCGATGT 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477169349419920