Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq17725 87.8 7e-13 >seq17725 Length=1166 Score = 87.8 bits (96), Expect = 7e-13 Identities = 205/303 (68%), Gaps = 10/303 (3%) Strand=Plus/Minus Query 5959 CTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTG 6018 ||||||| ||||||||||| | || || ||||| | || || || ||| || | Sbjct 1166 CTCGGCTACCTGCCCGGCAGCCTCGAGGACAAGATCGATCCGTATCTGCGTCCGCTGTTC 1107 Query 6019 GACGCGGTG--ATCGACCTGGTCGGCCCGACGATGACGAA--GCGCCTCCTCGAGTCGCG 6074 ||||||||| ||| | || | | | | || || | |||||| |||| | || Sbjct 1106 GACGCGGTGGGATCCA--TGATGGATCAG--GACCTCGTACCGCGCCTGCTCGCGAA-CG 1052 Query 6075 CCAGC-TGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACA 6133 || | | |||||||| ||||| ||||||||||| || || ||| ||||||| ||| | Sbjct 1051 GCACCATCGAGGTCGCTCCGCTCGCCTACATGCGCGGGCGCACGCTCAACGAGTCGTTCG 992 Query 6134 TCGTCGCTGACGAGATGCAGAACGCCACCCCGCGCCAGACCGCGCTGCTGGTGACCCGCC 6193 | || |||||| ||||||| | ||||| |||| | || | | ||||||| Sbjct 991 TGATCCTCGACGAGGCGCAGAACACGACCCCCGAGCAGATGAAGATGTTCCTCACCCGCC 932 Query 6194 TGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCGCCCG 6253 | |||| ||| ||||| ||| ||| |||||| | ||||| || ||||| || Sbjct 931 TCGGCTACGGTTCGAAGATGGTCGTGACGGGTGACGTGACCCAGGTGGATCTGCCCATCG 872 Query 6254 GCA 6256 ||| Sbjct 871 GCA 869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191411689518720