Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq17206 930 0.0 seq19565 165 3e-36 seq17873 84.2 7e-12 >seq17206 Length=1844 Score = 930 bits (1030), Expect = 0.0 Identities = 1251/1717 (73%), Gaps = 51/1717 (3%) Strand=Plus/Plus Query 39308 ACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCC 39367 ||||||||||| |||||||| || ||||| |||| || ||||| ||| ||| || ||| Sbjct 64 ACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGTTCC 123 Query 39368 TCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTC 39427 || | |||||| || ||||| | ||||| |||| | || ||||| || || || ||||| Sbjct 124 TCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAGTTG 183 Query 39428 GTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCC 39487 ||||||||| | | ||||| || ||||| ||||||||||||| || |||||||||||| Sbjct 184 GTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATGTCC 243 Query 39488 TCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCCGTCGAGCTGG 39547 ||||||||||||||||||| ||||| |||||| |||||| | ||||||||||||||| Sbjct 244 TCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGCTGG 303 Query 39548 AACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTCGTCCAGCGGG 39607 ||||| ||||||||| || ||| ||||| ||||||| || |||||||| ||| Sbjct 304 AACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGCTCA 363 Query 39608 ATGTTCTCCAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCC 39667 | | ||| ||||||| | || || ||||| | ||||||||||||| ||||| Sbjct 364 AGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCCGAG 423 Query 39668 ATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCAC 39727 |||||||||||||| ||||| || |||||||||||||||| | ||| | || |||||| Sbjct 424 ATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCGCAG 483 Query 39728 TGGGGGTAGTCCCACTGCGTGACGGTGACGCCGTCC-GCAGGACGGACCCACACCGGAAG 39786 |||||||| ||||||||||| | ||||||| || | || | || ||| | Sbjct 484 GTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCG-CGTTTCTGCAGCGGGAT 542 Query 39787 GTGATCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCG 39846 | |||| ||| || ||| | |||||||| || || || |||||||||||| ||| || Sbjct 543 GATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGCCG 602 Query 39847 AACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTC 39906 ||| || ||||| |||||||| |||||| ||| ||||| ||| | | ||| Sbjct 603 CTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCG---CCTCGGGATCCTC 659 Query 39907 GTACAG---GCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGAT 39963 | || | |||||| |||| ||||||| | |||||| ||||||||||||| | ||| Sbjct 660 GGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGTGAT 719 Query 39964 CCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTTCTC 40023 ||| || || || | |||| || ||| ||| |||||| || |||||||| Sbjct 720 GCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTC 779 Query 40024 GCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTT 40083 ||| | ||| || | | |||||||| | ||||||||||| ||| | || ||| Sbjct 780 GCCCATGCCGAACGGGAAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTT 839 Query 40084 GATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTA 40143 |||| |||| |||| ||||||| || || ||| | |||||||||||||||||||| Sbjct 840 GATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTA 899 Query 40144 CCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACAC 40203 | |||||||||||||||||| || ||||||||||||| ||| | ||||||||| || || Sbjct 900 CTTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGAC 959 Query 40204 GCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGT 40263 ||| |||||||| ||||| |||||||||||||| ||||||| ||| |||||||| ||||| Sbjct 960 GCGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGT 1019 Query 40264 GATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCA 40323 ||| | | | ||||||||||| || || || ||||||| || || || || || | Sbjct 1020 GATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCG 1079 Query 40324 CACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40383 | |||||| ||||| | |||| ||||||||||||||| || ||||||||| ||||| Sbjct 1080 GATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAA 1139 Query 40384 GCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCGG- 40442 ||||||||| |||| | | |||||||||||| | |||||||| || | |||||| Sbjct 1140 GCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGG 1196 Query 40443 --TCCCGTTCGGG-AACCGTCGAGCTGCCCCACGGTGGACCTCGTCCTCGAACCAGGTCA 40499 | ||| ||||| | | || | || |||| | |||||| | ||||||| | Sbjct 1197 GATGCCGCTCGGGTAGCGGTAGTGCAACCCC-TTCTCGACCTCCTTGATGAACCAGCTGT 1255 Query 40500 CCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGCATG----AGGTCGGTGTGCTCGAAC 40555 |||| || | || ||||||||||| |||| |||||| || || ||| | |||| Sbjct 1256 CCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAAC 1314 Query 40556 ATGCCCGTCGTGTCGACACGCTCGGCGATCTCCAGCGTGGTCCGCATCCCCCACTCCCAG 40615 | | | | ||||||||||| |||||| | || | | | | | Sbjct 1315 TCGAC------ATTGCAGCGCTCGGCGATGAGGAGCGTGTT----GTCGCACGCGTCGGG 1364 Query 40616 ATGGGAGAGGAGTCGATG-GCCGCCATCTCGGCGGCCGTCTTGATGTAGTACCCGGAGCC 40674 | | ||| | ||| |||| ||||||||| || ||||||| |||||| || ||||| Sbjct 1365 GAAGTCGCGGAAT--ATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCC 1421 Query 40675 CTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGCAGAGTAGGGC 40734 |||||| |||||||||||||| |||||| || ||| | ||| |||||||| || || Sbjct 1422 GTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGC 1481 Query 40735 ATCGTGCGCCTTGCTCTCGTCGGC--CGTG-ACGTAGTGGCTGTCGTTGGTGACCACCGG 40791 |||||||| | ||||||| |||| |||||||| ||||| ||| | || | Sbjct 1482 CGAGTGCGCCTCG---GCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGACGAG 1538 Query 40792 GGTGAGCGCGAGGT-GCTTGCCCAGCCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCT 40850 | || | ||||| || | | | | | ||||||| |||| || |||||||| | Sbjct 1539 CGGGATCTTGAGGTCGCGCG-CGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGT 1597 Query 40851 CCAGGCCGTGGTCCATGATCTC-CAG--GAAGTACCGGTCACGACCGAACACCTCCAGGT 40907 | || ||||||||||||| ||| ||| ||||| | || | ||||| | ||| || Sbjct 1598 CGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAGATGTCCTGGA 1654 Query 40908 AC-CGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATC 40966 || ||||| ||| || ||||| |||||||||||||||| || |||||| |||| Sbjct 1655 ACTCGGCC-GCCGCCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATC 1713 Query 40967 GCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCT 41003 | || ||||| ||||| ||| ||| ||||||| Sbjct 1714 TCGCCCGAGGGGCAACCCGTCGTGGTGATGAGGCCCT 1750 >seq19565 Length=416 Score = 165 bits (182), Expect = 3e-36 Identities = 242/341 (71%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 38936 GGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTC 38995 |||||||| ||| | ||||||||| || |||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 38996 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 39055 || |||||| || ||||||| ||||||||||||||||||||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 39056 AGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 39115 ||||| || || | |||| || || |||||||| || ||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 39116 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCT 39175 || | | ||| || | || | |||||| | ||||| ||| || || || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 39176 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GCTTC 39232 ||||| | || | |||| | || ||| |||| | || ||||| |||| Sbjct 126 CGCTCCTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTC 70 Query 39233 TTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAG 39273 ||||||||||| || || || || | |||||| ||||| || Sbjct 69 TTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAG 29 >seq17873 Length=3337 Score = 84.2 bits (92), Expect = 7e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 38489 AGCGATGCCTCGACCCCGGCCAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCGC 38548 |||| ||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| Sbjct 486 AGCGCGGCCTCGAGCCCGCGCAGCGGGTGGTCGGAGACGTAGAGGCCCAGCATCTCGCGC 427 Query 38549 TCGA 38552 |||| Sbjct 426 TCGA 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160342475944266