Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq17384 100 1e-16 seq20141 89.7 3e-13 >seq17384 Length=2032 Score = 100 bits (110), Expect = 1e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 62865 CGGGGGTTTCTGCTTGTAGCTCAGCTTGG-TAGAGCGCCCGCTTTGGGAGCGGGAGGTCG 62923 || ||||||| | |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 48 CGCGGGTTTCGGGGCGTAGCTCAGCTTGGCTAGAGCGCCCGCTTTGGGAGCGGGAGGTCG 107 Query 62924 CAGGTTCAAATCCTG 62938 ||||||| ||||||| Sbjct 108 CAGGTTCGAATCCTG 122 >seq20141 Length=413 Score = 89.7 bits (98), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 66127 GTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAAC 66186 |||| ||| || ||| ||||||| |||||||| ||||||| ||||| ||||||||||||| Sbjct 362 GTGCGCCCTCACGGGCTCGAACCGTGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAAC 303 Query 66187 TGAGCTATAGGGGC 66200 ||||||| ||| || Sbjct 302 TGAGCTAAAGGCGC 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243842627482168