Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq17206 897 0.0 seq19565 212 2e-50 seq19423 93.3 1e-14 >seq17206 Length=1844 Score = 897 bits (994), Expect = 0.0 Identities = 1297/1817 (71%), Gaps = 51/1817 (3%) Strand=Plus/Plus Query 38152 GCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTC 38211 ||||| ||||||| ||||| || ||||| | | | ||||||| ||| || | | Sbjct 1 GCGCGGCGGAGGATTTCGGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGAC 60 Query 38212 TGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGC 38271 ||||||||||| |||||||| || ||| |||||| || ||||| || |||||| Sbjct 61 ATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGT 120 Query 38272 TCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAG 38331 ||||| | |||||| |||||||| |||||| |||| ||||||||||||| || |||||| Sbjct 121 TCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAG 180 Query 38332 TTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATG 38391 || ||||| ||| | ||||| || ||||| ||||||||||||| || ||||||||| Sbjct 181 TTGGTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATG 240 Query 38392 TCCTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCGCCGTCGAGC 38451 |||||||| | ||| ||||||| ||||| |||||| |||||| | ||||||||||||| Sbjct 241 TCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGC 300 Query 38452 TGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGC 38511 ||||| || ||| |||||||| | ||| ||||| ||||||| | || |||||| ||| Sbjct 301 TGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGC 360 Query 38512 GGGATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCG 38571 | | ||||| ||||| | || || |||||| ||||||||||||||| |||||| Sbjct 361 TCAAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCC 420 Query 38572 CCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCG 38631 |||||||||||||| || ||||| |||||||||||||| | |||||| ||| ||||| Sbjct 421 GAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCG 480 Query 38632 CAGCTCGGGTAGTCGAACTGCGTGATCGTCACGCCGTCC-GCAGGCCGCACCCACGTAGG 38690 ||| ||||||||||||||||||||| || ||||||| || | || | | || Sbjct 481 CAGGTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCG-CGTTTCTGCAGCGG 539 Query 38691 GATGTGGTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATCTG 38750 |||| ||||| |||||| ||| |||||||| || || || |||||||||||| ||| Sbjct 540 GATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTG 599 Query 38751 CCGGACGAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTT 38810 ||| || || |||||||| |||| |||| || ||||| ||| | | Sbjct 600 CCGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCG---CCTCGGGATC 656 Query 38811 CTCGTACAGC---GCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGT 38867 |||| ||| ||||||| |||| ||||||| | |||||| ||||||||||||| ||| Sbjct 657 CTCGGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGT 716 Query 38868 GATGCCCTCCAGGGGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTT 38927 ||||||| || || || | |||| ||| ||| ||| |||||| || ||||| Sbjct 717 GATGCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTT 776 Query 38928 CTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGC 38987 |||||| | ||| || | | |||||||| | ||||||||||| ||| | || Sbjct 777 CTCGCCCATGCCGAACGGGAAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGA 836 Query 38988 CTTGATCCGTCCGTACGTCGCGATCTGTGCGAC---CTTGTCACTGCCGTACTTCTCGGT 39044 ||||||| ||||| || ||||||| || || || ||| ||||||||||||||| Sbjct 837 CTTGATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTC---GCCGTACTTCTCGGT 893 Query 39045 GACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCAT 39104 ||||||| ||| || ||||| || || || ||||||||||||| ||| | ||||||||| Sbjct 894 GACGTACTTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCAT 953 Query 39105 GGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAG 39164 ||||| || || ||||| ||||| |||||||||||||| ||||| | | || || || Sbjct 954 CGAGACGCGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAG 1013 Query 39165 GTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCC 39224 |||||||| | | |||||| ||| ||| || || || | ||||| || || ||||| Sbjct 1014 ATCGGTGATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCC 1073 Query 39225 GACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGA 39284 || | | |||||| ||||||| |||| ||||||||||||||| ||||||||||| Sbjct 1074 CACGCGGATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCC 1133 Query 39285 CGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTGCGGTGCTCGTC 39344 ||||| |||||||| |||| | | |||||||||||||| ||||| |||| | ||| Sbjct 1134 GGGGAAGCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGCGCACCGAGTC 1193 Query 39345 GTCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGCACCTGCTCGCGGAAGAACTG 39404 | | || | ||| ||||| || || || | |||| || | ||| | Sbjct 1194 GGGGATGCCGCTCGGGTAGCGGTAGTGCAACCCCTTCTCGACCTCCTTGATGAACCAGCT 1253 Query 39405 GCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATGAGGT---------TCTGGAA 39455 | |||| |||| ||| ||||||||||| |||| |||||| || | | ||| Sbjct 1254 GTCCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTGTTGAA 1313 Query 39456 CTCGAACATGCCGGTCGTGTCGACCCGGTCGGCGATCTCCAGCGTGGTCCGCATCCCCCA 39515 ||||| ||| | || |||||||| |||||| | || | | Sbjct 1314 CTCGACATTGCAG------------CGCTCGGCGATGAGGAGCGTGTT----GTCGCACG 1357 Query 39516 CTCCCAGATGGGAGAGGAGTCGATG-GCTGCCATCTCGGCGGCCGACTTCAGGTAGTACC 39574 | | | | | ||| | ||| || | ||||||||| || | ||| |||||||| | Sbjct 1358 CGTCGGGGAAGTCGCGGAAT--ATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGC 1414 Query 39575 CCTCGCCCTCGAACCGGAACCGATCCTCCTGGTAGAGGGTCGAGCCGGTCTGGACGCACA 39634 || ||| |||||| ||| || | | | || |||| ||||| | ||| ||||| | Sbjct 1415 CCGAGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGA 1474 Query 39635 GCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGACCA 39694 |||| || ||| ||| | || || | | || ||||||| ||||| ||| | | Sbjct 1475 GCAGCGCCGAGTGCGCCTCGGCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGA 1534 Query 39695 CCGGGGTGAGACCGAGG-CGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCG 39753 | | | || |||| ||| | ||| | ||||||| |||| || |||||| Sbjct 1535 CGAGCGGGATCTTGAGGTCGC-GCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCG 1593 Query 39754 ATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGC 39813 || || || ||||||||||||| ||| ||||||||| || | |||||||| ||| | Sbjct 1594 ATGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTCTCTCTGCCGAAGATGTCCTGG 1653 Query 39814 CACTTCGCGGCCTC--GGCGACGGCCTCCTCGTACTGGCCGAGGTTGAGCCGGGTCATCA 39871 ||| || ||| | | || |||||| |||||||| |||||| || |||||| | Sbjct 1654 AACTCGGCCGCCGCCTGCCG--GGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGA 1711 Query 39872 CTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGT-GCTCCGCCACCAGC 39930 |||| |||||| ||||| ||| ||| ||||||| ||| | || | || |||| Sbjct 1712 TCTCGCCCGAGGGGCAACCCGTCGTGGTGATGAGGCCCTTGCCGTAGGTCTG-CAGCAGC 1770 Query 39931 TCGGCGTCCATGCGCGG 39947 ||| |||||| || || Sbjct 1771 TCGCGGTCCATACGGGG 1787 >seq19565 Length=416 Score = 212 bits (234), Expect = 2e-50 Identities = 263/357 (74%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 37843 GGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTC 37902 |||||||| ||| | ||||||||| | ||||||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 37903 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 37962 || |||||| || ||||||| ||||||||||||||||||||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 37963 AGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 38022 ||||| || || | |||| || || |||||||| || ||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 38023 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAGTAGCCT 38082 || | | ||| || | || | |||||| | |||| ||| || ||||| || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 38083 CGCTCGCTC--GCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGG---GCT 38137 ||||| || ||| || | |||| | || ||| |||| | || ||||| || Sbjct 126 CGCTCCTTCATGCCGCC--CGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCT 72 Query 38138 TCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCA 38194 ||||||||||||| ||||| ||||||| |||||| || ||||| | | | ||||||| Sbjct 71 TCTTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAGCGAGAAGCCGGCCA 15 >seq19423 Length=288 Score = 93.3 bits (102), Expect = 1e-14 Identities = 196/280 (70%), Gaps = 23/280 (8%) Strand=Plus/Plus Query 39993 GAACAGGTTGTGCAGGCCGGTCTTGTTCGTGGC---GAGCATGGTCATGTGGGTGTAGGC 40049 ||| |||||||||| ||| || | |||| | |||||||||||||||||||||||| Sbjct 13 GAAGAGGTTGTGCATGCC---CTCGGTCGTCTCCGAGAGCATGGTCATGTGGGTGTAGGC 69 Query 40050 ACC-CCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCT 40108 || || ||| |||||||| ||| | | || ||||||| | || || || Sbjct 70 GCCGGCGCCCG-ACACGTCGT--CGCCACCAC-CG---CTGCCCCAGCGCACGCGGGTCT 122 Query 40109 GGTCGGAACGGTG---CCCCGGTGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCC 40165 ||||| ||||| || || | || ||| |||||||| |||||||| || |||| | Sbjct 123 TGTCGGTGCGGTGGGTGCCGGGGGTGAGGTAGGCCTCGATGCCGATGATCGGGTTGAGGC 182 Query 40166 CAGCG-GCCTGCCCCTGCGTGAAGAAGTCGTACGCACCATGCAG--GTTGCCGTGGTCGG 40222 | ||| ||| | |||| |||| ||| | || || | || |||||||||||||| Sbjct 183 C-GCGATCCTTCGCCTGACGCCAGAAATCGAATGCGCC--GAAGGTGTTGCCGTGGTCGG 239 Query 40223 TCATCGCGAGGGCTCTCATGCCCTGCGCCTTGGCCTCGGC 40262 | | ||||| ||| ||| ||||| || |||| |||| Sbjct 240 TGACCGCGATGGCGGGCATACCCTGGGCGGCGGCCGCGGC 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159651551396538