Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq17056 379 1e-100 >seq17056 Length=1684 Score = 379 bits (420), Expect = 1e-100 Identities = 558/782 (71%), Gaps = 17/782 (2%) Strand=Plus/Plus Query 66458 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTAC 66517 || || || || || ||||| || ||||| ||||||| ||| || |||||||| ||| | Sbjct 419 GTCGAGGTGATCCCGACCGGTTCGATCGCACTGGACGTCGCGCTCGGCATCGGCGGGCTC 478 Query 66518 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66577 ||| | ||||| | | || |||||||| || || || || || ||| | ||||| Sbjct 479 CCGCGCGGCCGCATCATCGAGATCTACGGTCCGGAGTCCTCGGGCAAGACCACTCTCACG 538 Query 66578 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66637 || |||||| | || || |||||| ||||| |||| |||||| | ||||||||| ||| Sbjct 539 CTGCACGCGATCGCGAACGCGCAGCGCGCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 598 Query 66638 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66697 ||| | || ||||| |||||||| || |||||| || ||| |||| || | || Sbjct 599 CACGCGCTCGACCCCGAGTACGCGCAGAAGCTCGGCGTCGACATCGATTCGCTGCTCGTC 658 Query 66698 GTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66757 |||||||| || || |||||||| || ||||||| ||| | || || || || Sbjct 659 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGATCCGTTCGGGG 718 Query 66758 GAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66817 | | | | ||||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 719 TCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 778 Query 66818 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGC 66877 ||||| || || ||||| ||||| |||||||| ||||| |||||||| ||||| | ||| Sbjct 779 GGCGAGATGGGCGACAGCCACGTGGGCCTGCAGGCGCGACTCATGTCGCAGGCGCTCCGC 838 Query 66878 AAGCTCACTGGCACCATCT---CCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 66934 ||| | || ||| ||| |||| ||||| || || ||| |||||||| | Sbjct 839 AAGATGACGGGCGG--TCTGAACCAG-ACCAAGACCACCGCGATCTTCATCAACCAGCTC 895 Query 66935 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCT 66994 ||||||||| ||||| | | | | |||| ||||| ||| |||| || ||||| Sbjct 896 CGCGAGAAGGTCGGCGTCTTCTTCGGCAGCCCC---GAGACGACCTCGGGGGGCAAGGCG 952 Query 66995 TTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 67054 | | ||||||||| || |||||| | || |||| |||||| ||| |||||| ||| Sbjct 953 CTCAAGTTCTACGCGTCGGTCCGTCTCGACATCCGCCGCATCCAGACCCTGAAGGACGGC 1012 Query 67055 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG 67114 | || || ||||||||||||||||| || |||||||||||||||||| |||| || || Sbjct 1013 CAGGACGCGGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCTCCCCCC 1072 Query 67115 CACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGG--TCGAAC 67172 | | ||||||||| | || | ||||| | |||||||| || |||| ||| | Sbjct 1073 TTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCTCGCGAGGGTTCG--C 1130 Query 67173 TCCTCGACCTGGCCGTGTC--GCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTA 67230 || ||||| | | ||||| ||| || || || |||||| || |||||| || || Sbjct 1131 TCATCGACTT--CGGTGTCGAGCACGGTCTCGTCAAGAAGAGCGGTTCCTGGTACACCTA 1188 Query 67231 CG 67232 || Sbjct 1189 CG 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242761469856906