Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq16942 100 2e-16 >seq16942 Length=2220 Score = 100 bits (110), Expect = 2e-16 Identities = 189/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 97250 CCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCG 97309 ||||| ||| || || || | || || ||| ||||||| ||||| || ||| ||| Sbjct 447 CCGTCGCCCTGGCCGATCAGTCGTTCAGCGCCGACCTCGTCGAGGATGACGCGGGAGTCG 506 Query 97310 GTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTG 97369 ||| || || |||||||| | || |||||||| || ||||| | ||| ||| Sbjct 507 GTGCCGGAGGCCACGGCGAACGCGTACCGGCTGGGCACGTTCGACTTGATCACGCCGGTG 566 Query 97370 ACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCC 97429 || || | || || || ||||| || || || || || || || || || ||||| || Sbjct 567 ACGACGTTGACCGACGGACGCTGGGTGGCGAGCACCAGGTGGATGCCCGCCGCGCGGGCG 626 Query 97430 TTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGG 97489 ||||| |||||| || | ||||||| || | | ||| | | ||||||| Sbjct 627 AGCTGGGTGATGCGCTGGATCGAGTCCTCGACGTCGCGC--GGAGC-GATGAGCATGAGG 683 Query 97490 TCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 97525 || ||||| ||||||||||| |||| | ||| ||| Sbjct 684 TCGGCGAGCTCGTCGACCACGACCAGCAGGTACGGG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354175083009275