Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq17206 859 0.0 seq19565 203 1e-47 seq19423 100 9e-17 >seq17206 Length=1844 Score = 859 bits (952), Expect = 0.0 Identities = 1296/1820 (71%), Gaps = 57/1820 (3%) Strand=Plus/Plus Query 38585 GCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTC 38644 ||||| ||||| | ||||| || ||||| | | | ||||||| ||| || | | Sbjct 1 GCGCGGCGGAGGATTTCGGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGAC 60 Query 38645 TGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGC 38704 ||||||||||| |||||||| || ||| |||||| || ||||| || |||||| Sbjct 61 ATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGT 120 Query 38705 TCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAG 38764 ||||| | |||||| |||||||| |||||| |||| | ||||||||||| || |||||| Sbjct 121 TCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAG 180 Query 38765 TTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATG 38824 || ||||| ||| | ||||| || ||||| ||||||||||| | || || |||||| Sbjct 181 TTGGTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATG 240 Query 38825 TCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGC 38884 |||||||| | ||| ||||||| ||||| |||||| |||||| | ||||||||||||| Sbjct 241 TCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGC 300 Query 38885 TGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAGC 38944 |||||||| |||||||||||| | ||| ||||| ||||| | | | ||| || ||| Sbjct 301 TGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGC 360 Query 38945 GGGATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCG 39004 | | ||||| ||||| | || || |||||| ||||||||||||||| |||||| Sbjct 361 TCAAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCC 420 Query 39005 CCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCG 39064 |||||||||||||| || ||||| |||||||||||||| | |||||| || ||||| Sbjct 421 GAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCG 480 Query 39065 CAGCTCGGGTAGTCGAACTGCGTGATCGTTACGCCGTCC-GCAGGCCGCACCCACGTCGG 39123 ||| ||||||||||||||||||||| | ||||||| || | || | | ||| Sbjct 481 CAGGTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCG-CGTTTCTGCAGCGG 539 Query 39124 GATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTG 39183 |||| |||| |||||| ||| |||||||| || || || |||||||||||| ||| Sbjct 540 GATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTG 599 Query 39184 CCGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTT 39243 ||| || || |||||||| |||| ||| || ||||| ||| | | Sbjct 600 CCGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCG---CCTCGGGATC 656 Query 39244 CTCGTACAGC---GCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGT 39300 |||| ||| ||||||| |||| ||||||| | |||||| ||||||||||||| ||| Sbjct 657 CTCGGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGT 716 Query 39301 GATGCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGGTCAGCTT 39360 ||||||| || || || | |||| || ||| ||| |||||| || ||||| Sbjct 717 GATGCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTT 776 Query 39361 CTCGCCGA-CCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGG 39419 |||||| | | ||| ||| | | |||||||| | ||||||||||| ||| | | Sbjct 777 CTCGCCCATGCCGAACGGG-AAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCG 835 Query 39420 CCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGA 39479 ||||||| ||||||| || ||||||| || || ||| ||||||||||||||||| Sbjct 836 ACTTGATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGA 895 Query 39480 CGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGG 39539 ||||| ||| || ||||| || || || ||||||||||||| ||| | ||||||||| | Sbjct 896 CGTACTTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCG 955 Query 39540 AGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGT 39599 ||||||| || ||||| ||||| |||||||||||||| ||||| | | || || || | Sbjct 956 AGACGCGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGAT 1015 Query 39600 CGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGA 39659 ||||||| | | |||||| ||| ||| || || || | |||||||| || ||||| | Sbjct 1016 CGGTGATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCA 1075 Query 39660 CCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACG 39719 | | | ||||| ||||||| |||| ||||||||||||||| ||||||||||| | Sbjct 1076 CGCGGATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGG 1135 Query 39720 GGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCGGTGCTCGTCGT 39779 |||| |||||||| |||| | | |||||||||| ||| ||||| | || | |||| Sbjct 1136 GGAAGCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGCGCACCGAGTCGG 1195 Query 39780 CG-TACCCCTGCGGGAAGCGACGGTCCATGCCGATGAGCACCTGCTCGCGGAAGAACTGG 39838 | | || || |||| |||| || || || | |||| || | ||| | | Sbjct 1196 GGATGCCGCT-CGGGTAGCGGTAGTGCAACCCCTTCTCGACCTCCTTGATGAACCAGCTG 1254 Query 39839 CCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATGAGGT---------TCTGGAAC 39889 |||| |||| ||| ||||||||||| |||| |||||| || | | |||| Sbjct 1255 TCCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTGTTGAAC 1314 Query 39890 TCGAACATGCCGGTCGTGTCGACCCGGTCAGCGATCTCCAGCGTGGTG-CGCATCCCCCA 39948 |||| ||| | || || ||||| |||||| || |||| | | Sbjct 1315 TCGACATTGCAG------------CGCTCGGCGATGAGGAGCGTGTTGTCGCA--CGCGT 1360 Query 39949 CGACCAGATGTCGGAGCTGTCGATG-GCTGCCATCTCGGCGGCCGACTTCAGGTAGTACC 40007 || || ||| || | ||| || | ||||||||| || | ||| |||||||| | Sbjct 1361 CG--GGGAAGTC---GCGGAATATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGC 1414 Query 40008 CTTCGCCCTCGAACCGGAAGCGATCCTCCTGGTAGAGGGACGAGCCGGTCTGGACGCACA 40067 | ||| |||||| |||||| | | | || |||| ||||| | ||| ||||| | Sbjct 1415 CCGAGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGA 1474 Query 40068 GCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGACCA 40127 |||| || ||| ||| | || || | | || ||||||| ||||| ||| | | Sbjct 1475 GCAGCGCCGAGTGCGCCTCGGCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGA 1534 Query 40128 CCGGGGTGAGACCGAGG-CGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCTCG 40186 | | | || |||| ||| | ||| | ||||||| |||| || |||||| Sbjct 1535 CGAGCGGGATCTTGAGGTCGC-GCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCG 1593 Query 40187 ATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCCGC 40246 || || || ||||||||||||| ||| ||||||||| || | |||||||| ||| | Sbjct 1594 ATGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTCTCTCTGCCGAAGATGTCCTGG 1653 Query 40247 CACTTCGCAGCCTC--GGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCCGGGTC---A 40301 ||| || ||| | | || |||||| |||||||| |||||| || |||||| | Sbjct 1654 AACTCGGCCGCCGCCTGCCG--GGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGA 1711 Query 40302 TCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGT-GCTCGGCCACC 40360 || | || | | |||||| ||||| ||| ||| ||||||| ||| | || | || | Sbjct 1712 TCTC-GCCCGA--GGGGCAACCCGTCGTGGTGATGAGGCCCTTGCCGTAGGTCTG-CAGC 1767 Query 40361 AGCTCGGCGTCCATGCGCGG 40380 |||||| |||||| || || Sbjct 1768 AGCTCGCGGTCCATACGGGG 1787 >seq19565 Length=416 Score = 203 bits (224), Expect = 1e-47 Identities = 261/356 (73%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 38276 GGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTC 38335 |||||||| ||| | ||||||||| | ||||||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 38336 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 38395 || |||||| || ||||||| ||||||||||||||||||||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 38396 AGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 38455 ||||| || || | |||| || || |||||||| || ||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 38456 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCT 38515 || | | ||| || | || | |||||| | |||| ||| || || || || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 38516 CGCTCGCTTGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGCACCTCGG---GCTT 38571 ||||| ||| | || | | |||| | || ||| |||| | || ||||| ||| Sbjct 126 CGCTC-CTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTT 71 Query 38572 CTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCA 38627 |||||||||||| ||||| ||||| | |||||| || ||||| | | | ||||||| Sbjct 70 CTTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAGCGAGAAGCCGGCCA 15 >seq19423 Length=288 Score = 100 bits (110), Expect = 9e-17 Identities = 195/278 (70%), Gaps = 19/278 (7%) Strand=Plus/Plus Query 40426 GAACAGGTTGTGCAGGCCGGTCTTGTTCGTCGC---GAGCATGGTCATGTGGGTGTAGGC 40482 ||| |||||||||| ||| || | ||||| | |||||||||||||||||||||||| Sbjct 13 GAAGAGGTTGTGCATGCC---CTCGGTCGTCTCCGAGAGCATGGTCATGTGGGTGTAGGC 69 Query 40483 ACC-CCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCT 40541 || || ||| |||||||| ||| | | || ||||||| | || || || Sbjct 70 GCCGGCGCCCG-ACACGTCGT--CGCCACCAC-CG---CTGCCCCAGCGCACGCGGGTCT 122 Query 40542 GGTCGGAGC---GCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCC 40598 ||||| || | | ||| || | || ||| |||||||| |||||||| || |||| | Sbjct 123 TGTCGGTGCGGTGGGTGCCGGGGGTGAGGTAGGCCTCGATGCCGATGATCGGGTTGAGGC 182 Query 40599 CAGCG-GCCTGCCCCTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTCGGTC 40657 | ||| ||| | |||| |||| ||| | || ||| ||||||||||||||| Sbjct 183 C-GCGATCCTTCGCCTGACGCCAGAAATCGAATGCGCCGAAGGTGTTGCCGTGGTCGGTG 241 Query 40658 ATCGCGAGGGCCTTCATGCCCTGCGCCTTGGCCTCGGC 40695 | ||||| ||| ||| ||||| || |||| |||| Sbjct 242 ACCGCGATGGCGGGCATACCCTGGGCGGCGGCCGCGGC 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160176142256850