Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17077 107 2e-18 >seq17077 Length=1461 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 34549 CGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCA 34608 |||||||||| | ||| ||| | |||||||||| | ||||||||| | ||| ||| Sbjct 1230 CGCGTGGAACGTGGCGGAGCTCGACCAGATGGCGCTCGCACCGTGCCACGCGTTCTTCCA 1289 Query 34609 ATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGG 34668 |||||||| || | || |||| || ||||||||||| || || || | |||||| Sbjct 1290 GTTCTACGTGGCCGACGGCAAGCTCTCGTGCCAGCTCTACCAGCGCTCTGCCGACATGTT 1349 Query 34669 GTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 | |||||||||||||| || || ||||| ||||| ||| |||| |||| || Sbjct 1350 CCTCGGGGTGCCGTTCAATATCGCCTCCTACGCGCTGCTTACGCTCATGGTCGCGCA 1406 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||| |||| ||| ||||| ||||| || || |||||||||||||| | | Sbjct 1406 TGCGCGACCATGAGCGTAAGCAGCGCGTAGGAGGCGATATTGAACGGCACCCCGAGGAAC 1347 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| | || || || ||||||||||| || |||| || | || |||||||| ||| Sbjct 1346 ATGTCGGCAGAGCGCTGGTAGAGCTGGCACGAGAGCTTGCCGTCGGCCACGTAGAACTGG 1287 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||| | ||||||||| | |||||||||| | ||| ||| | |||||||||| Sbjct 1286 AAGAACGCGTGGCACGGTGCGAGCGCCATCTGGTCGAGCTCCGCCACGTTCCACGCG 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448074359526480