Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq13386 104 2e-17 seq16010 86.0 4e-12 >seq13386 Length=19191 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| || ||| | || || ||| || | Sbjct 13746 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAA-GCTTC 13688 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| |||||| |||||| || |||||||| |||| || Sbjct 13687 GGACACAATTGAAAAT--GTCAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCAGAC 13630 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | || ||||||||||||||||||||||| || | | | | | ||||| ||| Sbjct 13629 CAACAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTAC 13570 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||||| ||| | || ||||| Sbjct 13569 AACATCCAAAAAGAGTCCACCCTCCACTTGGT 13538 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || || || || || ||||| ||| || ||| |||| || ||| | Sbjct 13975 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTC 13916 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| || || ||||| ||||| | || || Sbjct 13915 TGACACCATCGAAAAT--GTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGAT 13858 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | ||||||||||||||||||||||| || | ||||| ||||| |||||| Sbjct 13857 CAACAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTAC 13798 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || || | || |||||| | ||| | ||||| || Sbjct 13797 AACATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 13748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| ||| || || | || |||||| | Sbjct 14203 AATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 14144 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | || ||||| || || ||||| ||||| |||| || Sbjct 14143 TGATACCATTGAGAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGAC 14086 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | || || || ||||||||||||||||| || | | | | | | ||||| ||| Sbjct 14085 CAACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTAC 14026 Query 27967 AACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| | ||||| || ||||||||| | ||| | || || Sbjct 14025 AACATCCAAAAAGAATCAACACTT--CACTTGGTTTTGAGATTGAGAGGAGG 13976 >seq16010 Length=816 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| | || ||||| | ||||| ||| ||| ||| | || |||||| || Sbjct 364 ATGCAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCC 305 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| |||||| || || ||||| | || | | Sbjct 304 GACACAATTGAAAAT--GTCAAAGCAAAAATTCAAGATAACGAAGGAATCCCACCACATC 247 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || ||||||||||||||||||||||| || | | | | | || ||||||| Sbjct 246 AACAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACA 187 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||||||| || || | ||||||||| | ||| Sbjct 186 ACATCCAAAAGGAATCAACACTCCATTTGGTTCTTCGT 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355716852167193