Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq30935 163 7e-35 seq13386 163 7e-35 seq971 113 1e-19 seq16010 107 4e-18 seq2100 89.7 1e-12 >seq30935 Length=6295 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||| || ||||| ||||||||||| || || | ||| Sbjct 1492 TCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAG 1433 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||| || || || || || |||||||| | | |||||| || || || | Sbjct 1432 AGTACGTCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGAT 1373 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| ||| || |||||||||||||| ||| || || || Sbjct 1372 TCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTC 1313 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| |||||||| || || | ||||| Sbjct 1312 GAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1268 >seq13386 Length=19191 Score = 163 bits (180), Expect = 7e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || || ||||||||||| ||||| | | || Sbjct 13753 ACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGT 13812 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| || || || || || || || |||||||| || || || | ||| Sbjct 13813 GCGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCC 13872 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| ||| || ||||||||||||||||| |||||| || || Sbjct 13873 TTCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAG 13932 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| ||||| ||||| || || | |||||| Sbjct 13933 TGTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||||| || || ||||||||||| || || | || || Sbjct 11976 ACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGT 12035 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || |||||||| || |||||||| || || || | ||| Sbjct 12036 GCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCC 12095 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| || ||||||||||||||||||||| ||| || || | Sbjct 12096 TTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAA 12155 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || ||||| ||||| || || | |||||| Sbjct 12156 GGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Score = 158 bits (174), Expect = 3e-33 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||||||||| || || | ||||| ||||||||||||| || Sbjct 13999 GTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCCATCTTCCAATTG 14058 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | | ||||||||| || |||| |||||||||||| |||||||| Sbjct 14059 TTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTT 14118 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || ||||| ||||| ||| || || | |||||| || ||||| || Sbjct 14119 GGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCAGT 14178 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||| || ||||| | |||||| Sbjct 14179 CAAAGTTTTGACAAAGATTTGCATT 14203 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || || || ||||| || |||||||||| |||||| || |||||||||| || Sbjct 13034 GTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCCATCTTCCAATTG 13093 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | | ||||||||| || |||| |||||| ||||| |||||||| Sbjct 13094 TTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTT 13153 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| ||||||||||| ||| || || | ||||| || || || || Sbjct 13154 GGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGCCGGT 13213 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | ||||| Sbjct 13214 GAGGGTCTTGACGAAAATTTGCAT 13237 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || || |||||||| ||||| || || | ||||| ||||| ||| Sbjct 12214 AGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCT 12273 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || |||||||| | | ||||||||| || || | |||||| ||||| Sbjct 12274 TCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 12333 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || ||||||||||| ||||| ||||| || || ||||| ||| Sbjct 12334 TGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTC 12393 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||| || ||||| | ||||| Sbjct 12394 TTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || |||||||||||||||||||| || || | || || ||||||||| Sbjct 13535 AGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCT 13594 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || || || | | ||||||||| || |||| |||||| || || Sbjct 13595 TCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCT 13654 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||| || ||||| || ||||| || |||||| || | ||||| || Sbjct 13655 TGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTT 13714 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | || || ||||| | ||||| Sbjct 13715 TTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| | | ||||||||| || |||| |||||||||||| |||||||| | Sbjct 12568 CCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 12627 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||||||||| |||||| || | ||||| || ||||| |||||| Sbjct 12628 TTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGAGA 12687 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| || || | |||||| Sbjct 12688 GTCTTGACGAAGATTTGCATT 12708 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || ||||||||||| || |||| |||||| ||||| || ||||| | Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||||||||| ||||| ||| || || || ||||| |||||||| || || Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || ||||| | ||||| Sbjct 14530 GTTTTGACAAAAATTTGCAT 14549 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | | ||||||||| || || | |||||||||||| |||||||| | Sbjct 13379 CCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 13438 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||||||||||||||| ||| || || | |||||| || ||||| || | | Sbjct 13439 TTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAA 13498 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | |||||| Sbjct 13499 GTTTTGACGAAGATTTGCATT 13519 >seq971 Length=9908 Score = 113 bits (124), Expect = 1e-19 Identities = 314/473 (66%), Gaps = 18/473 (4%) Strand=Plus/Plus Query 139444 GAACATGGTACAGCCTCAAACATTAAGTCGCGAGTCAACAGGCTTTCTGTTCTTGGGGCG 139503 ||| | || || || || || ||||| |||||||||||||||||||| ||| | || || Sbjct 3897 GAATACGGAACTGCTTCGAATATTAAATCGCGAGTCAACAGGCTTTCCGTTTTGGGAGCT 3956 Query 139504 ATCGTCTCT-TGCCAGCAAAAGTTAAAACTTTTACGGGACGTCCCAAAGAACGGACTTGT 139562 ||| ||| | | || || | | ||| | || | || ||| || |||||||| Sbjct 3957 ATCACTTCTGTACAAGGAAGACTGAAATTGTATAACAAA-GTTCCACCAAATGGACTTGT 4015 Query 139563 AATTTTTAGCGGAAGTGTTATGCTTCCCGAAGGCAAGGAGAAAAAGGTTGCAT-TCGACA 139621 | | | | |||| ||||| | ||||| || || || || || | || |||| Sbjct 4016 CGTGTATTGTGGAACAATTATGACTGATGAAGGAAAAGAAAAGAAAGT-GAATATCGATT 4074 Query 139622 TTGAACCTTTCCGTCCAATCAGCCAGAAAGTTTACGCATGCGACAGTGTTTTCCATACGG 139681 |||| |||||| | |||| | | ||| ||||||| ||||| || | Sbjct 4075 TTGAGCCTTTCAAAGCCATCAACACTTCTTTGTACCTTTGCGACAACAAATTCCACACTG 4134 Query 139682 ATTGTCTGAAAGATCTGTTGTATGATGACCAATCTTATGGTTTTATTATCGTGGATGGCT 139741 | | || ||| | ||| ||||||| | | ||||| ||||| ||||||| Sbjct 4135 AAGCTTTGCAAGGATTATTGGCTGATGACAACAAGTTCGGTTTCATTATTATGGATGGAA 4194 Query 139742 CCGGTGTTTTATTTGCGACTCTTTCAGGAAGTAC-----AAGAACA--ACAATCTCGAGT 139794 |||| ||| || | || ||| ||||| ||| ||| | |||| || | | Sbjct 4195 ACGGTTGTTTGTTCGGAACACTTCAAGGAAATACTCGTGAAGTTCTTCACAAATTC-ACT 4253 Query 139795 TTCCAAGTTTGCCTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAA 139854 || | |||||| |||||||||||| |||||||| ||||||||| | ||||||| Sbjct 4254 GTCGA--TTTGCC----AAAGAAGCACGGTAGAGGAGGTCAATCTGCTGTTCGTTTTGCT 4307 Query 139855 AGACTTCGAAAGGAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGC 139907 | ||||| || ||||| || ||||| ||| |||||||||| || || ||||| Sbjct 4308 CGTCTTCGTAATGAAAAAAGACACAATTACGTGAGAAAAGTAGCTGAAAACGC 4360 >seq16010 Length=816 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || || ||||||||||| ||||| | ||| || ||||||||||||| || Sbjct 162 TGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTCCAATTGT 221 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | |||||| | || || | |||||| || || || || ||| Sbjct 222 TTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTGAATTTTT 281 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || ||||| || ||| || ||||| ||||| || ||||| || Sbjct 282 GCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTGATAGTTTTTCCAGT 340 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 210979 CGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCA 211038 |||| || | | |||||| || || || | ||||||||||||||||||||| ||| | Sbjct 1 CGAAAATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGA 60 Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098 | ||||| |||||||| || ||| || ||||| ||||| || ||||| || || || | Sbjct 61 CATTTTCAATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTTCCGGTAAGTGTTT 120 Query 211099 TTACAAA 211105 | || || Sbjct 121 TGACGAA 127 >seq2100 Length=124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || || |||||||| || || || | ||| |||||||| |||||||| ||| Sbjct 124 GCGAAAATGAGACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTG 65 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||||||||| || ||| || || | |||||| || ||||| || || || Sbjct 64 ACATTTTCGATGGTGTCGGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTAAGTGTT 5 Query 211098 TT 211099 || Sbjct 4 TT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158653593981035