Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13386 152 1e-31 seq30935 140 8e-28 seq14733 95.1 3e-14 seq2100 86.0 1e-11 seq26738 84.2 5e-11 >seq13386 Length=19191 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| || || ||||||||||||| ||||| |||| | ||||| || Sbjct 13987 TCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCC 14046 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || || |||||||| | || ||||||||| || ||||| |||||||| Sbjct 14047 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTT 14106 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || ||||| || || | ||| || || || ||||| Sbjct 14107 GTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGAT 14166 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || ||||||||||| | || | ||||||| Sbjct 14167 GGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| ||||| ||||||| ||||| |||| | ||| Sbjct 11976 ACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGT 12035 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| || |||||||| || || || || || Sbjct 12036 GCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCC 12095 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || |||||||||||| |||| ||| || || || Sbjct 12096 TTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAA 12155 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || | || || | ||| | ||||||| Sbjct 12156 GGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||| || ||||| ||||| | ||| ||||| | | ||||| || Sbjct 13022 TCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCC 13081 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || || |||||||| | || ||||||||| || ||||| ||||| || Sbjct 13082 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTT 13141 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||| |||||||| || | ||| || || || ||||| Sbjct 13142 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGAT 13201 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || | || || | ||| | |||||| Sbjct 13202 AGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || ||||||||||| | ||||| |||| | ||||| || ||| Sbjct 12214 AGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCT 12273 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || |||||||| | || ||||||||| || || || ||||| |||||| Sbjct 12274 TCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 12333 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || ||| ||||||||| || || | || || || | ||||| || Sbjct 12334 TGAAT-TTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGT 12392 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||||||||| | || | |||||| Sbjct 12393 CTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||| ||||||| |||||||| | ||| || Sbjct 13753 ACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGT 13812 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || || || || |||||||| || || || || || Sbjct 13813 GCGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCC 13872 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| || ||| |||||||||||| || | ||| || || | Sbjct 13873 TTCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAG 13932 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | || || | ||| | ||||||| Sbjct 13933 TGTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| | || ||||||||| || || || |||||||||||||||||||| Sbjct 13379 CCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 13438 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||||||| || | ||| || || || ||||| || || || |||||| Sbjct 13439 TTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAA 13498 Query 225694 GTTTTTATGAACACTTGCATT 225714 ||||| | ||| | ||||||| Sbjct 13499 GTTTTGACGAAGATTTGCATT 13519 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| | || ||||||||| || ||||| |||||||||||||||||||| Sbjct 12568 CCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 12627 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||||||| || | ||| || || || ||||| || || || || | | Sbjct 12628 TTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGAGA 12687 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 12688 GTCTTGACGAAGATTTGCATT 12708 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || ||||||||||| || ||||| ||||| |||||||| ||||| Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||| || || | ||| || || | ||||| ||||| || || | Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 14530 GTTTTGACAAAAATTTGCAT 14549 >seq30935 Length=6295 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || || ||||||| ||||| |||| | ||| Sbjct 1489 ACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 1430 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || || || || |||||||| | || |||||| || || || || || Sbjct 1429 ACGTCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCC 1370 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| || ||| |||||||||||| |||| || || || | Sbjct 1369 TTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAG 1310 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||||| ||| || | ||| | |||||| Sbjct 1309 GGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 1268 >seq14733 Length=4620 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || || |||||||| ||||| ||||| ||| |||||| || ||| |||| |||| Sbjct 631 TATGTCAAGCCTTGGTAAGGTTCTTCGCGTTGCATCGAATTAATCCGCATGCTCCGCCGC 572 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGG-TG 7842 || | | | |||||| || |||||||||||| |||||||| |||| | | |||| | Sbjct 571 TTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAGCCTTGCGGCCGTACTCCCCAGGCGG 512 Query 7843 GAATATTTACGCGTTAGCT 7861 | | || | ||||||||| Sbjct 511 GGAACTTAATGCGTTAGCT 493 >seq2100 Length=124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || || |||||||| || || || || || ||||||||||||||||| || Sbjct 124 GCGAAAATGAGACGTTGTTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTG 65 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||||||||| || | ||| || || || ||||| || || || || | ||| Sbjct 64 ACATTTTCGATGGTGTCGGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTAAGTGTT 5 Query 225697 TT 225698 || Sbjct 4 TT 3 >seq26738 Length=103 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 225598 TCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 || || || || |||||||||||||||||||| || ||| |||||||||||| || Sbjct 1 TCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCAGAA 60 Query 225658 GTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | ||| || || || ||||| || || || ||||||||||| Sbjct 61 GCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192018441769946