Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq13386 98.7 8e-16 seq16010 84.2 2e-11 >seq13386 Length=19191 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| || |||| ||| | |||||||| ||||||||||| ||||| | Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| || ||||||||||||||| || || | || | |||||||||||| || Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 101132 ACGCCTTCTTTGTC 101145 | ||||||||||| Sbjct 13131 ATTCCTTCTTTGTC 13144 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||||||||||||||||| ||||| |||| | ||| | |||||| Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 |||||||| || || | || | |||||||||||| || | ||||||||||| | Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 12336 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| ||| |||| | | || || | | | ||| | ||| || || || Sbjct 12337 ATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTT 12396 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || ||||| ||||| | ||| |||||||| Sbjct 12397 CCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | || || |||||||| || ||||| |||| | |||| | ||||||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 |||||||| || ||| | || | |||||||||||| || | |||||||| || | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 |||||| ||| |||| | | || || | | ||| | || || ||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || ||||||||||| | ||| |||||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| || |||| ||| | |||||||||||||| || ||||| |||| Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||||||||||||||| || || | || | |||||||||||| || Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 101132 ACGCCTTCTTTGTC 101145 | ||||| ||||| Sbjct 14096 ATTCCTTCCTTGTC 14109 >seq16010 Length=816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 |||||||| ||||| || |||||||| | | |||| | ||||||||||||||| || Sbjct 168 GTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTCCAATTGTTTTCCG 227 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | |||||||| | | || | ||||| || || ||||||| ||| Sbjct 228 GCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTGAATTTTTGCTTTG 287 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTG-TTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 |||| | | || || | | | | | ||||| || |||||||| || |||||||| Sbjct 288 ACATTTTCAATTGTGTCGGAAG-CTTCGACTTCGAGTGTGATAGTTTTTCCAGTCAATGT 346 Query 101221 TTTAATAAAAATTTGCAT 101238 ||| | | |||||||| Sbjct 347 TTTGACGACGATTTGCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409493248604781