Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq32583 197 1e-45 >seq32583 Length=15821 Score = 197 bits (218), Expect = 1e-45 Identities = 384/558 (69%), Gaps = 7/558 (1%) Strand=Plus/Plus Query 4383 TCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCA-C 4441 ||||| |||||||| ||||| || ||| ||| || || || ||||| | | ||| | Sbjct 6690 TCAGCAACAAATTCGATATATTGTGACATAAGTCGACAATTCATACCAATCA-TATCAAC 6748 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||| | || | ||||| || |||||||| || | ||||| ||| |||| || || | Sbjct 6749 AGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACGGCATCTTTGATAATTTCATA 6808 Query 4502 TATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCAC 4560 ||| |||| ||||||| ||| ||| || |||| | ||| || ||||||| Sbjct 6809 GATTCGTTCTTGGCTCAATTTATTTTG-AAGCATCGAATACAAAAGACAAGCGAAATCAC 6867 Query 4561 AATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAAC 4620 || | ||||||||||| ||| || || || ||| || ||||| ||||| || | Sbjct 6868 GGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAATCCTGGCATCAATC 6927 Query 4621 CTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGG 4680 |||||||||| | ||| || || | ||||||||| || || |||||||| ||||| || | Sbjct 6928 CTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAATATTCCTTCGACAG 6987 Query 4681 CGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATG 4740 | ||||| || | ||||| | || || ||| || ||||||||| || | Sbjct 6988 CAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTTTTATCAGAAATCCATTTCAAGG 7047 Query 4741 CCCAGTTAGCTTTTTTCTTAACGCA-CGGAATTGTGTATATAGCGTTAAATAATTTACTT 4799 |||| | ||| || || || | | | ||||| | | || || || || | | | | Sbjct 7048 CCCAATCAGCCTTCTTTTTGATGAATTCGAATT-CGAAAATTGCATTGAAAAGTGAATGT 7106 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 |||| | || |||||||||| || || | | ||||||||| ||||| || Sbjct 7107 CTTTCTTGTTCATCGCGAATATAAGTTTCAATCAATTTTGAATACATTTCTGAATGAATG 7166 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| || ||||| || ||||| |||||| ||| ||||||| |||| ||||| || Sbjct 7167 TTTTCAATTGCAATTTGGAATCCATAAAAGAATCGGGCTTCTGAGACTTTGACTTCATTC 7226 Query 4920 CAAAATCTTTC-NACTAA 4936 | |||||||| ||||| Sbjct 7227 GAGAATCTTTCGCACTAA 7244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| || || || || ||| || || ||||| ||||||||| |||| | | Sbjct 7394 ACCAAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACA 7453 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACT 5051 ||| | ||||| || || | ||||| ||| | || |||||| ||||||||| Sbjct 7454 AAGAATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACT 7513 Query 5052 TCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 |||||||||||||| || || || | || || ||||| Sbjct 7514 TCTTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTA 7551 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| | |||| |||||||| || || || ||||||||||| ||||| || || | Sbjct 6479 AACACCAGGTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGAT 6538 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATT 4336 || ||||||||||| ||||| || ||||| Sbjct 6539 TGATATATTTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426874936580147