Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq16795 102 5e-17 seq18931 100 2e-16 seq16951 86.0 4e-12 >seq16795 Length=1614 Score = 102 bits (112), Expect = 5e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 43058 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAG 43117 ||||||| || || | || || ||||||||| | ||||||||||||||| | Sbjct 591 TCGACGCCGATCCCGAGGTCGAGGTCATCATCGTCGCCCGCGGCGGCGGCGATTTCCAGC 532 Query 43118 ACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGG 43177 |||| || |||| |||||||| || | ||||| |||| || | | | || ||| Sbjct 531 ACCTGCTGCCGTTCAGCGACGAGGGGGTGCTGCGCGCGGCGTCCGAGGCGACGACGCCGA 472 Query 43178 TTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTC 43237 | ||| ||||| || |||||| || |||||||| |||||| || | ||||| | Sbjct 471 TCGTGAGCGCGATCGGGCACGAGGCCGACCGGCCGCTGCTCGACGAGGTCGCTGACCTGC 412 Query 43238 GAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 43283 | || | || ||||| || || ||||| || || || |||||||| Sbjct 411 GTGCCTCGACACCGACCGACGCGGCGAAGCGCGTGGTGCCCGACGT 366 >seq18931 Length=1323 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 72058 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAG 72117 ||||| ||| ||| ||||| ||||||||| ||||| | ||| | | ||||| Sbjct 785 CAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGTTGCCGCGCTTTCGGCGAG 844 Query 72118 CCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGC 72177 || || ||| || ||| |||||| ||||||||| ||| || ||||||||||| || Sbjct 845 TACGCGGACAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGT 904 Query 72178 CTCAAGCAGCGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGA 72236 |||| |||||||||||| ||| || | || || | || || |||| ||||| Sbjct 905 CTCACCCAGCGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGA 963 Query 72237 GGTCGAGGAGATCGGCCCCGCACTGCG 72263 |||||| ||| |||||||| | || || Sbjct 964 GGTCGAAGAGGTCGGCCCCACGCTCCG 990 >seq16951 Length=1564 Score = 86.0 bits (94), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 8009 GCCTCTGTAGCTCAGTTGGTTTAGAGCAACCGCCTCTTAAGCGGTGGGTCGCAGGTTCGA 8068 ||||| |||||||||| | | |||||||| |||| ||| | || |||||||||||||| Sbjct 75 GCCTCCGTAGCTCAGTGGAT--AGAGCAACGGCCTTCTAATCCGTCGGTCGCAGGTTCGA 132 Query 8069 ATCCTTCCGGGGGCACTCCCGCACC 8093 ||||| ||||||||||| |||||| Sbjct 133 ATCCTGCCGGGGGCACT--CGCACC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297798150626900