Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq17077 105 5e-18 >seq17077 Length=1461 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27189 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 27248 ||| ||||| || || || |||||||| || || | |||| ||| || || | ||| Sbjct 1437 GACGAACTCGCCGGGCTCGAGCCCGGTCTGCTGCGCGACCATGAGCGTAAGCAGCGCGTA 1378 Query 27249 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 | |||||| || || || |||||||| |||||| | || | |||||||||||| || Sbjct 1377 GGAGGCGATATTGAACGGCACCCCGAGGAACATGTCGGCAGAGCGCTGGTAGAGCTGGCA 1318 Query 27309 CGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 |||||||| || ||| ||||| ||||| | | ||||||||||| | || ||||| Sbjct 1317 CGAGAGCTTGCCGTCGGCCACGTAGAACTGGAAGAACGCGTGGCACGGTGCGAGCGCCAT 1258 Query 27369 GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406 || | | || |||||| ||| | ||||||| Sbjct 1257 CTGGTCGAGCTCCGCCACGTTCCACGCGGAGACGATGA 1220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369356071439729