Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq18931 105 4e-18 seq16795 102 5e-17 seq16951 86.0 4e-12 >seq18931 Length=1323 Score = 105 bits (116), Expect = 4e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 70995 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAG 71054 ||||| ||| ||| ||||| ||||||||| ||||| | ||| | | ||||| Sbjct 785 CAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGTTGCCGCGCTTTCGGCGAG 844 Query 71055 CCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGC 71114 || || ||| || ||| |||||| ||||||||| ||| || ||||||||||| || Sbjct 845 TACGCGGACAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGT 904 Query 71115 CTCAAGCAGCGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGA 71173 |||| |||||||||||| ||| || | || || | || || |||| ||||| Sbjct 905 CTCACCCAGCGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGA 963 Query 71174 GGTCGAGGAGATCGGCCCCGCGCTGCG 71200 |||||| ||| |||||||| |||| || Sbjct 964 GGTCGAAGAGGTCGGCCCCACGCTCCG 990 >seq16795 Length=1614 Score = 102 bits (112), Expect = 5e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 42749 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAG 42808 ||||||| || || | || || ||||||||| | ||||||||||||||| | Sbjct 591 TCGACGCCGATCCCGAGGTCGAGGTCATCATCGTCGCCCGCGGCGGCGGCGATTTCCAGC 532 Query 42809 ACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGG 42868 |||| || |||| |||||||| || | ||||| |||| || | | | || ||| Sbjct 531 ACCTGCTGCCGTTCAGCGACGAGGGGGTGCTGCGCGCGGCGTCCGAGGCGACGACGCCGA 472 Query 42869 TTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTC 42928 | ||| ||||| || |||||| || |||||||| |||||| || | ||||| | Sbjct 471 TCGTGAGCGCGATCGGGCACGAGGCCGACCGGCCGCTGCTCGACGAGGTCGCTGACCTGC 412 Query 42929 GAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 42974 | || | || ||||| || || ||||| || || || |||||||| Sbjct 411 GTGCCTCGACACCGACCGACGCGGCGAAGCGCGTGGTGCCCGACGT 366 >seq16951 Length=1564 Score = 86.0 bits (94), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 7940 GCCTCTGTAGCTCAGTTGGTTTAGAGCAACCGCCTCTTAAGCGGTGGGTCGCAGGTTCGA 7999 ||||| |||||||||| | | |||||||| |||| ||| | || |||||||||||||| Sbjct 75 GCCTCCGTAGCTCAGTGGAT--AGAGCAACGGCCTTCTAATCCGTCGGTCGCAGGTTCGA 132 Query 8000 ATCCTTCCGGGGGCACTCCCGCACC 8024 ||||| ||||||||||| |||||| Sbjct 133 ATCCTGCCGGGGGCACT--CGCACC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296131632512221