Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq16821 104 7e-18 >seq16821 Length=3270 Score = 104 bits (114), Expect = 7e-18 Identities = 274/409 (67%), Gaps = 21/409 (5%) Strand=Plus/Minus Query 33936 CTCGAATCGCGAGTACTTACCCAGGAACGCGCACCG-GACAGTGCTTGGCTCGCCGTTGC 33994 || ||| |||||||| | ||| |||||||| |||| ||| |||| | |||||| | Sbjct 1826 CTGGAAGCGCGAGTAGTGGCCCTGGAACGCG-ACCGTGACGGTGCCGGTGGGGCCGTTTC 1768 Query 33995 GGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATAGACCT 34054 | ||||| || | || | || ||| ||||| | | | ||||| | ||| || Sbjct 1767 GCTGCTTGGCCAGAATGAGGTCGGCCTCGCCGGCGCGCGGATTGTCCTTCTCGTAG--CT 1710 Query 34055 CGTCTCG--GTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCG 34112 | |||| || || | || | || ||||||||||||||||| || || || || || Sbjct 1709 GGACTCGCGGTGCAGCAGGATCACCATGTCGGCGTCCTGCTCGAGCGAACCCGATTCACG 1650 Query 34113 CAGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGAGCTGCG 34171 |||||| ||| || ||||| |||| |||||||| | ||||| ||||||| Sbjct 1649 CAGGTCGCTGATCGCGGGCATCTTGT-CGGCGCGCTGCTCGGACGCACGGTTCAGCTGCG 1591 Query 34172 ACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGGGACATGT 34231 ||||| |||| || || | | | |||||| | | || || ||| ||||| | | Sbjct 1590 ACAGCGCGATGACCGGCACATCGAGCTCCTTCGAGAGCAGTTTGAGGGCACGGGAGAACT 1531 Query 34232 CGCTGACGTCCT-----CGG---TGCGAGTTGACTTGCCGGAGCTCTCCAGCAACTGCAG 34283 | ||||| |||| ||| | || || ||| || |||| |||| ||| || Sbjct 1530 CACTGACCTCCTGCTGACGGCTCTCGGACTT--CTTTCC---GCTCGAGAGCAGCTGGAG 1476 Query 34284 GTAGTCCACCACCAGCAGGCTCAACCCATGGCGCTGCTTGTGACGCCGG 34332 |||||| | ||| | || || | ||| || |||||||| |||||||| Sbjct 1475 GTAGTCGATCACGACCATGCGGAGCCCGTGCCGCTGCTTCAGACGCCGG 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160400052989910