Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq18015 724 0.0 seq19961 342 3e-89 seq16795 140 2e-28 seq18931 129 4e-25 >seq18015 Length=1372 Score = 724 bits (802), Expect = 0.0 Identities = 725/941 (77%), Gaps = 0/941 (0%) Strand=Plus/Minus Query 78220 GGCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCAC 78279 ||| |||||||||||| | || |||||| ||| | || ||| | || || Sbjct 1200 GGCGATCAACTGGAACCGGATCGAGGACGAGAAGGACCTCGAGGTCTGGAACCGCCTGGT 1141 Query 78280 CGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACAC 78339 | |||||||||| ||||||||||||| ||| |||| |||||| | | || |||| || Sbjct 1140 CAACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGGCGAC 1081 Query 78340 CCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGA 78399 || |||||| | ||| || ||||| ||||| |||||||| || |||||||||||||| Sbjct 1080 GCTCACGCCGCAGGAGCAGCTGCTCACCATGCGCGTGTTCACGGGTCTCACCCTGCTCGA 1021 Query 78400 CACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGA 78459 ||| ||||||||||| || |||||| ||||||| ||| ||||||| | ||| |||||||| Sbjct 1020 CACGATCCAGGGCACGGTCGGCGCCGTCTCGCTGATCCCCGACGCGATCACTCCGCACGA 961 Query 78460 GGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTC 78519 |||||| || ||| ||||||||||||||||||||||| ||||||||| |||| || Sbjct 960 GGAGGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTACTCGTC 901 Query 78520 GATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGA 78579 ||||||||| ||||| |||||| | || |||| ||||| |||||||| ||||||| || Sbjct 900 GATCTTCTCGACGCTGTGCTCCACGCAGGAGATCGACGACGCGTTCCGCTGGTCGGTTGA 841 Query 78580 GAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCC 78639 |||| | |||||||| ||||| |||| || | ||||||||| ||||||||||| Sbjct 840 GAACCCGAACCTGCAGAAGAAGGCGTCGATCATCGTCGACTACTACGAGGGCGACGACCC 781 Query 78640 CTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTA 78699 ||||||| ||| | ||| ||||| || || ||||| ||||||||||||||||| Sbjct 780 GCTGAAGCGCAAGATCGCCTCCACGCTGCTCGAATCGTTCCTGTTCTACTCGGGCTTCTA 721 Query 78700 CCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTT 78759 |||||| |||||||||||||||| ||||||||| || ||||| || ||| | ||||| | Sbjct 720 CCTGCCCATGTACTGGTCGAGCCACGCCAAGCTCACCAACACGGCAGACCTCATCCGCCT 661 Query 78760 GATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCT 78819 || ||||| ||||| || || || || ||||||||||| ||||||| |||| ||||| Sbjct 660 CATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCT 601 Query 78820 CGAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTC 78879 ||||| | || || ||| | ||||||||||| ||||| ||| || | | Sbjct 600 CGAGAACGAGACCGAGGAGCGTCGCCAGGAGCTCAAGGATTACACCTTCTCGCTCATGTA 541 Query 78880 GGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCGGACTCAC 78939 || || ||||| |||||| | ||||||| | ||||| ||| || || ||||| Sbjct 540 CGAACTGTACGAGAACGAGGTCAAGTACACCGCCGACCTCTACGACCCGGTGGGCCTCAC 481 Query 78940 CGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTA 78999 |||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 480 CGAGGACGTCAAGAAGTTCCTGCACTACAACGCGAACAAGGCGCTCATGAACCTCGGCTA 421 Query 79000 CGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGACCCGGCCATCATGTCCGCGCTCTC 79059 ||| | ||||||||||||| |||| | ||||||| ||| |||| ||||| || Sbjct 420 CGAGCCGATGTTCCCCAAGGAGATGACCGACGTGAACCCGGCGATCCTGTCGGCGCTGTC 361 Query 79060 ACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCGG 79119 || || |||||||||||| ||||||||||| || ||||| || ||||||||||| Sbjct 360 GCCGAACGCCGACGAGAACCATGACTTCTTCTCGGGCTCGGGTTCCTCGTACGTCATCGG 301 Query 79120 CAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGAT 79160 ||| || | ||||| | || ||||||||||||||||||| Sbjct 300 CAAGGCCGTCGCCACCGAGGACGAGGACTGGGACTTCTGAT 260 >seq19961 Length=5435 Score = 342 bits (378), Expect = 3e-89 Identities = 645/945 (68%), Gaps = 18/945 (2%) Strand=Plus/Plus Query 78222 CCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCACCG 78281 |||||||||||||| ||| |||||| ||| |||||| | || || || | Sbjct 4211 CCATCAACTGGAACCGGGTGCTCGACGACAAGGACCTGGAGGTGTGGAACCGGCTGACGG 4270 Query 78282 GCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACCC 78341 ||||||||| ||||||||||||| ||| | || ||||||||||| | ||| | | Sbjct 4271 CGAACTTCTGGCTGCCCGAGAAGGTTCCGCTCTCGAACGACATCCCCGCATGGCAGCGCA 4330 Query 78342 TTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGACA 78401 | | || || ||| || || ||||| ||||||||||| ||||| ||||||||| Sbjct 4331 TGAGCCCTGAGGAGCGCACCCTGACGATGCGGGTGTTCACCGGGCTCACGATGCTCGACA 4390 Query 78402 CCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAGG 78461 || | |||| || || || | |||| | ||| || || | || |||||||| Sbjct 4391 CCGTGCAGGCGACGGTCGGTGAGATCTGCCAGATCCAGGATGCGCAGACGGAGCACGAGG 4450 Query 78462 AGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCGA 78521 ||||||| ||| |||||||| |||||| ||||||| ||||| |||||| |||| Sbjct 4451 AGGCGGTCTACACGAACATCGCCTTCATGCAGTCGGTGCACGCGCGCTCCTACTCCTCGG 4510 Query 78522 TCTTCTCAACGCTATGCTCCTCCAAGC---AGATTGACGAGGCGTTCCGTTGGTCGGAGG 78578 | ||||| || || | |||||| | |||| |||||||| | || ||| ||| || Sbjct 4511 TGTTCTCGACCCT---CACCTCCACGTCCGAGATCGACGAGGCATATCGGTGGGCGGTGG 4567 Query 78579 AGAACGAGTACCTGCAGC------GCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCG 78632 ||||| |||||| ||||| | | | || | |||||| ||| || Sbjct 4568 GCAACGATCTGCTGCAGGAGCGCTGCAAG---CGGGTGCTCGCGCACTACT-CCGGTCCG 4623 Query 78633 ACGACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGG 78692 || || ||||||| |||||| | || || ||| | | || |||| ||| Sbjct 4624 --GATCCGCTGAAGCGCAAGGTGTCGTCGACCCTGCTGTCGTCGCTGCTGCTCTATGCGG 4681 Query 78693 GCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGA 78752 ||||||| |||||| || ||| ||| | ||| | ||||| |||||||| ||| || Sbjct 4682 GCTTCTATCTGCCGCTGCACTTCTCGGTGCACGCGACCCTGACCAACACCGCCGACATGG 4741 Query 78753 TCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGC 78812 |||| |||| | || ||| | || || || || |||||| || ||||||| ||||| Sbjct 4742 TCCGCCTGATCCTGCGCGACAAGGCGGTGCACGGCTACTACTCGGGCTACAAGTTCCAGC 4801 Query 78813 GAGGCCTCGAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATC 78872 | || |||| || | || | || || || ||| | || | ||| ||| | Sbjct 4802 GGGGGCTCGCGAAGCTCGGCGAGACGGAGCGCGCCGAGATGCGCGACTTCACCCTCGCGC 4861 Query 78873 TGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCG 78932 ||||| || |||||||| ||| | |||| | | | ||||||| || | ||| Sbjct 4862 TGCTCGACGACCTCTACGAACTGGAGCTCGCCTACTCGGGGGAGCTCTACGAGCCCCTCG 4921 Query 78933 GACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACC 78992 |||||| || || || | |||| |||| ||||||| ||||||||||| ||||||| Sbjct 4922 GACTCATGGACGACGTGGCGGTGTTCGTGCGTTACAACGCGAACAAGGCGCTCATGAACC 4981 Query 78993 TCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGACCCGGCCATCATGTCCG 79052 | |||||| || | |||||| ||| ||||| || |||| | ||| | | | Sbjct 4982 TGGGCTACCCGGCGCGGTTCCCGCCGGAGCAGACCCGGGTGAACCCCGAGATCCTCGCGG 5041 Query 79053 CGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACG 79112 ||||||| || || ||||||||||||||||||||||||| || || ||||| ||||| Sbjct 5042 CGCTCTCGCCCGGGAGCGACGAGAACCACGACTTCTTCTCGGGTTCCGGCTCCTCCTACG 5101 Query 79113 TCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCT 79157 | || ||| | || | ||| | || |||||||||||||||| Sbjct 5102 TGATGGGCGTCGGAGAGGACACCACCGACGAGGACTGGGACTTCT 5146 >seq16795 Length=1614 Score = 140 bits (154), Expect = 2e-28 Identities = 262/382 (69%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 42097 GCTCATCGGCCTGATCACCGCGGAGGGCAGCGACGCCGAGAAGGACGTCCTGAACGTCGC 42156 ||||||||| || |||||| | | ||||||||||||||||||| || | ||| Sbjct 746 GCTCATCGGACTCGTCACCGGCCGCGACTCCGACGCCGAGAAGGACGTCGTGCGCAACGC 687 Query 42157 CCGGGACCGATGGCCGCACGTGCAGTTCAAGCCGTACCACATCCCTGTGCAGGGCCAACG 42216 | | || ||||| |||| ||||||| || ||| | | ||||||||| | || Sbjct 686 CATGCTGCGCTGGCCCGGGGTGCGGTTCAAGATCCACTACAGCGCGGTGCAGGGCGACCG 627 Query 42217 CT--GCGCAGGACGT-GCCACCGCCGCCCTGAAGGCACTGGATGCCGACCCCGAGGTTGA 42273 | ||| || || || |||| || | | || || ||||| |||||||| || Sbjct 626 CGCGGCGACCGAGGTCGCGACCGGGATCCGTACG---CTCGACGCCGATCCCGAGGTCGA 570 Query 42274 CGTCATCATCTTCGCCCGCGGCGGCGGGTCCAACCAGGACCTCCTTCCCTGGTCCGACGA 42333 ||||||||| |||||||||||||||| |||| |||| || || | |||||| Sbjct 569 GGTCATCATCGTCGCCCGCGGCGGCGGCGATTTCCAGCACCTGCTGCCGTTCAGCGACGA 510 Query 42334 GGGCCTCTCCCGGGCCGTGTTCGCCGCTAACACGCCCACGGTCAGCGCCATCGGACACGA 42393 ||| | || || | || || || | ||||| | || ||||| ||||| ||||| Sbjct 509 GGGGGTGCTGCGCGCGGCGTCCGAGGCGACGACGCCGATCGTGAGCGCGATCGGGCACGA 450 Query 42394 GAACGACAAGCCGATGCTGGACCGGGTTGTGGACCTGCGAGCTGCGACTCCGACAGATGC 42453 | |||| |||| |||| ||| ||| | |||||||| || |||| ||||| || || Sbjct 449 GGCCGACCGGCCGCTGCTCGACGAGGTCGCTGACCTGCGTGCCTCGACACCGACCGACGC 390 Query 42454 GGCAAAACGTGTCGTACCCAAC 42475 ||| || || || || ||| || Sbjct 389 GGCGAAGCGCGTGGTGCCCGAC 368 >seq18931 Length=1323 Score = 129 bits (142), Expect = 4e-25 Identities = 235/339 (69%), Gaps = 9/339 (3%) Strand=Plus/Plus Query 69642 ATCACCGTCATCGGTAACCTGACCGCCGACCCCGAACTCCGGTTCACGCCCTCCGGT--G 69699 ||||||||| |||| |||||| ||||||||||||| || ||| | ||||| | Sbjct 677 ATCACCGTCGTCGGGAACCTGGTTGCCGACCCCGAACCGCGCGTCAGCCAGGCCGGTAAG 736 Query 69700 CCGCGGTCGCGAACTTCACCGTCGCGTCGACCCCGCG-GTACTTCGACAAGCAGTCGAAC 69758 | || | || ||| |||| ||||| ||||| || | |||| |||||| | Sbjct 737 TCCTGG--GTGACGTTCCGGATCGCCTCGACGCCGCGCGTGCG-CGACCGTCAGTCGGGC 793 Query 69759 GAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCTGCAACGTCTGGCGCGAGTACGCCGAG 69818 || ||| ||| | |||||| || ||||| | ||| || | |||||||||| || Sbjct 794 GACTGGTCGGACGGCGAGGCGCTGTTCCTCGGTTGCCGCGCTTTCGGCGAGTACGCGGAC 853 Query 69819 AACGTGACTGAGTCGCTCCAGAAGGGCGCCCGCGTCATCGTCCAGGGCAAGCTCAAGCAG 69878 ||| | | | ||||||| |||||| | || || |||||||||||| |||| ||| Sbjct 854 AACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGTCTCACCCAG 913 Query 69879 CGGTCCTA---CGAGAAGGATGGCCAGCCGCGCACCACCTTCGAGCTCGAGGTTGAGGAG 69935 || ||| ||| || | || |||| ||||||| | |||| |||||||| || ||| Sbjct 914 CGCAGCTACACCGACAACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGAGGTCGAAGAG 973 Query 69936 ATCGGCCCCGCACTCCGGTACGCCACCGCCCGGGTCACC 69974 |||||||| | ||||| | ||| | ||| ||| ||| Sbjct 974 GTCGGCCCCACGCTCCGCTGGGCCTCGACCCAGGTGACC 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299199177372062