Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030930.1 Length=46570 Score E Sequences producing significant alignments: (Bits) Value seq16942 89.7 2e-13 >seq16942 Length=2220 Score = 89.7 bits (98), Expect = 2e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39059 CAGTTCGCGTCCGGGTCGATGCTGCAGCGCAAGCTTCGCGTCGGCTATGCGCGCGCCGGA 39118 ||||||| ||| |||||||||||||||||||| |||||||||| ||| ||||| Sbjct 229 CAGTTCGGCTCCACCTCGATGCTGCAGCGCAAGCTCCGCGTCGGCTTCGCGAAGGCCGGC 170 Query 39119 CGCCTGCTCGACGAGCTCGAGGCGCTCGACATCGTCGGCCCCGCACAGGGCAGCAAGGCC 39178 ||||| | || | | ||| | | ||||||||| ||||| | |||| |||||| Sbjct 169 CGCCTCATGGATCTGATGGAGTCCCGCGACATCGTGGGCCCGTCCGAGGGTTCGAAGGCC 110 Query 39179 CGCGAGGTGCTCGT 39192 ||||| || ||||| Sbjct 109 CGCGACGTCCTCGT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148843060439256