Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq18931 113 3e-20 seq16795 102 5e-17 seq16951 86.0 4e-12 >seq18931 Length=1323 Score = 113 bits (124), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 72432 CGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACATCTGGCGCGAGCCGGCCGA 72491 ||| ||| ||||| ||||||||| ||||| | ||| | | ||||| || || Sbjct 793 CGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGTTGCCGCGCTTTCGGCGAGTACGCGGA 852 Query 72492 GAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGCCTCAAGCA 72551 ||| |||||| |||||| |||||||||| ||| || ||||||||||| || |||| || Sbjct 853 CAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGTCTCACCCA 912 Query 72552 GCGCAGCTAC-GAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAGGTCGAGG 72610 |||||||||| ||| || | || || | || || |||| ||||||||||| | Sbjct 913 GCGCAGCTACACCGAC-AACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGAGGTCGAAG 971 Query 72611 AGATCGGCCCCGCGCTGCG 72629 || |||||||| |||| || Sbjct 972 AGGTCGGCCCCACGCTCCG 990 >seq16795 Length=1614 Score = 102 bits (112), Expect = 5e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 43259 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAG 43318 ||||||| || || | || || ||||||||| | ||||||||||||||| | Sbjct 591 TCGACGCCGATCCCGAGGTCGAGGTCATCATCGTCGCCCGCGGCGGCGGCGATTTCCAGC 532 Query 43319 ACCTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGG 43378 |||| || |||| |||||||| || | ||||| |||| || | | | || ||| Sbjct 531 ACCTGCTGCCGTTCAGCGACGAGGGGGTGCTGCGCGCGGCGTCCGAGGCGACGACGCCGA 472 Query 43379 TTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTC 43438 | ||| ||||| || |||||| || |||||||| |||||| || | ||||| | Sbjct 471 TCGTGAGCGCGATCGGGCACGAGGCCGACCGGCCGCTGCTCGACGAGGTCGCTGACCTGC 412 Query 43439 GAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 43484 | || | || ||||| || || ||||| || || || |||||||| Sbjct 411 GTGCCTCGACACCGACCGACGCGGCGAAGCGCGTGGTGCCCGACGT 366 >seq16951 Length=1564 Score = 86.0 bits (94), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 8439 GCCTCTGTAGCTCAGTTGGTTTAGAGCAACCGCCTCTTAAGCGGTGGGTCGCAGGTTCGA 8498 ||||| |||||||||| | | |||||||| |||| ||| | || |||||||||||||| Sbjct 75 GCCTCCGTAGCTCAGTGGAT--AGAGCAACGGCCTTCTAATCCGTCGGTCGCAGGTTCGA 132 Query 8499 ATCCTTCCGGGGGCACTCCCGCACC 8523 ||||| ||||||||||| |||||| Sbjct 133 ATCCTGCCGGGGGCACT--CGCACC 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300050029230996