Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq31956 242 5e-59 seq32583 100 4e-16 >seq31956 Length=51777 Score = 242 bits (268), Expect = 5e-59 Identities = 579/863 (67%), Gaps = 22/863 (3%) Strand=Plus/Plus Query 77385 GTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTC 77444 ||||| ||| | |||||||| | |||||||| | ||||||||||||||||||||| Sbjct 35785 GTTTC-GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGT 35843 Query 77445 TTATTGAGATCT-TGT--GCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCA 77501 || || | |||| || |||| | | | || ||||| | ||| || || | Sbjct 35844 TTGTTCAAATCTCTGGCAGCTTGAGAAGTG---AATGGATATCTCATAAGCATGAAACAA 35900 Query 77502 TCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCT 77561 ||||| ||||| || || || | ||||| || | ||| | | |||| ||| |||| ||| Sbjct 35901 TCTGCCAATCCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCT 35960 Query 77562 TCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTA 77621 || |||| ||||||||||| ||||| || || || || | ||||| | | | Sbjct 35961 TCAGGAACTGGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGA 36020 Query 77622 ACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC-CATCTATAACAAACATGTTCAAA 77678 | || || ||||| | ||||| || |||| || | ||||| ||||| Sbjct 36021 GCAACTTCAGCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAAC 36080 Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCG 77738 || || ||||| | ||||||||| || || |||| | | | | || || || || Sbjct 36081 GCAATTGATGCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCA 36140 Query 77739 GTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCAT 77798 || || | ||| ||||| || || || | ||||||||| || | ||| ||| Sbjct 36141 GTGCACAAATTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCC 36200 Query 77799 GAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT--T 77856 | || ||||| ||| | || | || || ||||| || |||||||| | || | Sbjct 36201 GCATCTTTATATGTGATATAAGGCATTCCAGTCTCAATTTG--ATTCGATACAACATGCT 36258 Query 77857 TCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTC--TCTTTC--ATATTGA 77912 ||| | ||| ||||| || || ||| | || | | || |||||| ||||| Sbjct 36259 CCCACAATTTTCTCGCTTT---CACAGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTG 36314 Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 || || || ||| || || || |||||||| ||||| | ||| | ||||| ||| Sbjct 36315 GTGTAAAGAGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGG 36374 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| | ||||| || | ||| | || |||||||| || | ||| || | ||| Sbjct 36375 CACATTAGCGACCAATCTTCGTCTCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAA 36434 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 ||||| | || ||||| || | ||| | |||||| || || || || ||| || Sbjct 36435 AGAGCCAGGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCG 36494 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 | || || | |||||| | |||||||||||| ||||| || || | | || || ||| Sbjct 36495 ACGAATTCGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGT 36554 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || || || || ||||| | ||||||||| ||||| || ||||| | | |||||||| | Sbjct 36555 TTGTTTCCACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACA 36614 Query 78213 ATACCGTTAGATGTTCCATTTGT 78235 | ||| || |||||||| || || Sbjct 36615 AGACCATTTGATGTTCCGTTGGT 36637 Score = 181 bits (200), Expect = 1e-40 Identities = 421/632 (67%), Gaps = 6/632 (1%) Strand=Plus/Plus Query 78282 CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCC 78341 || ||||| || || | || || || | || || |||||| ||||||||||| ||| Sbjct 36737 CCGATTCCACCAGCATTTTTCGAGATCAATGCACATTGTTTCAGAGTATCGTAGATTCCC 36796 Query 78342 TCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 || ||||| |||| | || | ||| || |||||||| | || |||| Sbjct 36797 AAGATCGAATCATCGCTCATTGTTAGCAAAAAGCAAGATGACATTTGTGGCCGACGAGTT 36856 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || | || || ||||| || || ||||| || | || | || || | |||||||| Sbjct 36857 CCCGAGTTGAACAATGTTGGCGAAGCATGTGTCATATATCTCTCCGACATGAGATTGTAG 36916 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 ||||| || |||| || | || | |||||||| || | || | ||||||||| Sbjct 36917 GTTTCGATGGCTGCATCAACATCGTCTCCGTGAATTCCAACAGAAACTCTCATCAACATT 36976 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || || | ||| || | | || || |||||||| | || ||| |||||| |||| Sbjct 36977 TGTTGTGGGCGTTCGACGATTTGATCATCGATTTTCAAAAGATACGATCTTTCCAGAGTT 37036 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 || |||||||| || ||||||| | || | ||||||| || | || || |||||| Sbjct 37037 TTGAAACCAAAGAAGGTGTATGAGTAATCGCGATCGTAAACGATGGCTGAGTTAAGTTTA 37096 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAG-TAGTTGA--AATAATAGGAGATCGTACA 78698 ||| | ||| ||| ||| || || | |||| ||| || ||||| || Sbjct 37097 TCTGCATTTTTCATAATTGTAT---TGTAAGTTTCTTGACTAATCATTGGAGAATGTTGT 37153 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttttttt 78758 || | ||||| | | | | ||| || ||| || ||| || | ||| ||| Sbjct 37154 CCGGTCAAAGGATGATGGAATTCGTACAAAGTTTTCATCACTTCAGAGAAAACTTTGTTT 37213 Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 |||| |||||| | ||||| ||||| ||||||||||| |||| |||||| || |||||| Sbjct 37214 GTTTTCTTGTGCAAGTTAGAAACAGCAATTCTTGCAGCAAGAAGAGCATATTCTGGATGT 37273 Query 78819 TGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 || || || | || || |||| || || | | |||| || || | |||||| || Sbjct 37274 TGAGTTGTCATTGAAGCGGCGGTTTCAGCGGCAAGATTATCCAATTCAACAGTTGTTACA 37333 Query 78879 CCATTATATAGTCCTTGAATAACTTTCATGGC 78910 || || || | ||| || ||||| ||||| Sbjct 37334 CCTTTGTACAATCCACTGATGACTTTGATGGC 37365 Score = 179 bits (198), Expect = 5e-40 Identities = 303/438 (69%), Gaps = 7/438 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| | | ||| ||||| ||||| || | ||| |||| || |||||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||| | || |||||| || | || ||||||||||||| || | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||||||||||| | ||| || ||||| | ||||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG-----TATTTTGAATGG 77037 |||| |||||| | | | |||||| ||| ||||| |||| |||||||||| | Sbjct 35327 CAAACTGTTTTGTACAACTCTTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATCG 35384 Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 | ||| | || | | ||| || |||||||||| ||| ||| || | Sbjct 35385 ATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACCA 35444 Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 || | | | | ||| ||||| || ||||| || || |||||||| || | |||| | Sbjct 35445 AATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAAT 35504 Query 77158 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAG 77217 | ||||| || |||||||| | || ||||||||||| | |||||||| || |||| Sbjct 35505 AGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAG 35564 Query 77218 CAGTTGGCATAGGTGCCA 77235 |||||||||| || |||| Sbjct 35565 CAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| || ||||| || ||||||||| |||||| |||||||| || ||| | || || Sbjct 7395 CCAAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAA 7454 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | ||| ||| | ||| ||| | ||| || || ||||||||| | ||| |||| Sbjct 7455 AGAATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTT 7514 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 ||||| | ||||| |||||||| | || || || || | | ||| || | | || Sbjct 7515 CTTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTT 7574 Query 48703 GGATTGGGAAAATAACAAATCTATT 48727 || |||||||||||| |||| ||| Sbjct 7575 TGAGTGGGAAAATAACGAATCGATT 7599 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 47791 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATC---TTCTTGAGACATAACTCCCA 47847 || |||| |||||| | || | | ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907 | |||||||||| |||||||||||||| ||||| ||||| || || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 47908 TTTCCATAAAATCAAATGGATT 47929 ||||||| ||||| |||||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694377395121760