Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq31956 219 6e-52 seq32583 111 2e-19 >seq31956 Length=51777 Score = 219 bits (242), Expect = 6e-52 Identities = 571/861 (66%), Gaps = 20/861 (2%) Strand=Plus/Plus Query 75981 TTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCT 76040 |||| ||| | || ||||| | || || ||| | ||||||||||||||||||||| | Sbjct 35786 TTTC-GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTT 35844 Query 76041 TATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTG 76100 | || | |||| || | || | || ||||| | ||| || || ||||| Sbjct 35845 TGTTCAAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTG 35904 Query 76101 CTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTG 76160 | | ||| || || || | ||||| || | ||| | | |||| ||| ||| ||||| | Sbjct 35905 CCAATCCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAG 35964 Query 76161 GAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCA 76220 ||| || |||||||| || || || || || || | ||||| | | | | | Sbjct 35965 GAACTGGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAA 36024 Query 76221 CGTCCTTTAGTTTGAGAAAATCAAAT---TTTCCATCTATCACAAACATATTAAGAGCTA 76277 | || ||||||| ||||| || ||| || | ||||| ||| | || | Sbjct 36025 CTTCAGCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAA 36084 Query 76278 TAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGC 76337 | ||||| | ||||||||| || || |||| | | | | | || || || || |||| Sbjct 36085 TTGATGCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGC 36144 Query 76338 ATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGT 76397 | | ||| || || || ||||||| ||||||||| || | ||| ||| | | Sbjct 36145 ACAAATTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCAT 36204 Query 76398 CCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT--TTCCA 76455 | ||||| | | | || ||||||| ||||| || |||||||| | || | ||| Sbjct 36205 CTTTATATGTGATATAAGGCATTCCAGTCTCAATTTG--ATTCGATACAACATGCTCCCA 36262 Query 76456 GACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTC--TCTTTC--ATATT--GTGT 76509 | ||| ||||| | || ||| | || ||| || |||||| ||||| |||| Sbjct 36263 CAATTTTCTCGCTTTCAC---AGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTGGTGT 36318 Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 | | | | ||| || || || |||||||| ||||| | || ||||||| || || Sbjct 36319 AAAGAGC--TTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCA 36376 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||| | ||||| || | ||| | || |||||||| || | ||| || | ||| || Sbjct 36377 CATTAGCGACCAATCTTCGTCTCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAG 36436 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 ||| | || ||||| || | ||| |||||| || || || || ||| | | Sbjct 36437 AGCCAGGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGAC 36496 Query 76690 GAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTT 76749 ||| || | |||||| | |||||||||||| ||||| || || | |||| || ||||| Sbjct 36497 GAATTCGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTT 36556 Query 76750 ATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAAT 76809 || || || ||||| | ||||||||| ||||| || ||||| | | |||||||| || Sbjct 36557 GTTTCCACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAG 36616 Query 76810 GCCGTTAGATGTACCATTTGT 76830 || || ||||| || || || Sbjct 36617 ACCATTTGATGTTCCGTTGGT 36637 Score = 185 bits (204), Expect = 1e-41 Identities = 307/441 (70%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| | | ||| ||||| ||||| || | ||| |||| || |||||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| ||| | || |||||| || | || ||||||||||||| || | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| ||||||||||| | ||| || ||||| | ||||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG-----TATTTTGAATGG 75632 |||| |||||| | | | |||||| ||| |||| ||||| |||||||||| | Sbjct 35327 CAAACTGTTTTGTACAACTCTTTGATTTCAGTTGGA--ATTTGTTCAATATTTTGAATCG 35384 Query 75633 ATCC---GCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGG 75689 |||| || || || | | ||| || || ||||||| ||| ||| || Sbjct 35385 ATCCATTGCTGGCA---ATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAA 35441 Query 75690 TTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAG 75749 ||| | | | | ||| ||||| |||||||| || || |||||||| || | ||||| Sbjct 35442 CCAAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAG 35501 Query 75750 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTG 75809 || ||||| || |||||||| | || ||||||||||| | |||||||| || | Sbjct 35502 AATAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGG 35561 Query 75810 AAGCAGTCGGCATAGGTGCCA 75830 ||||||| ||||| || |||| Sbjct 35562 AAGCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| || ||||| || ||||||||| |||||| ||||||||||| ||| | || ||| Sbjct 7396 CAAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAAA 7455 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 ||| |||||| ||| ||| | ||| || || ||||||||| | ||| ||||| Sbjct 7456 GAATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTTC 7515 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 |||| | ||||||||||| || | || || || || | | ||| || | ||| || Sbjct 7516 TTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTTT 7575 Query 47193 GATCGGAAAAATAACAAATCTATT 47216 || || |||||||| |||| ||| Sbjct 7576 GAGTGGGAAAATAACGAATCGATT 7599 Score = 89.7 bits (98), Expect = 7e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46317 TTCTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGT 46376 ||||| || |||||| || | |||| ||||| |||||||||||||| ||||| || Sbjct 6467 TTCTTTTGTCATAACACCAGGTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGT 6526 Query 46377 TTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||| || || | ||||||||||||||| ||||| || ||||| Sbjct 6527 TTTTCCGTCGATTGATATATTTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712635332930880