Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq17077 412 2e-110 seq16795 100 2e-16 >seq17077 Length=1461 Score = 412 bits (456), Expect = 2e-110 Identities = 467/623 (75%), Gaps = 6/623 (1%) Strand=Plus/Plus Query 781 GACACCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCG 840 ||| |||||||| |||||| ||||||| | | ||| |||| | |||||| || || Sbjct 840 GACCCCCTACGAGGACCTGCTGCGCGAGGTGTTCGAGCACGGCACGCCGAAGGGCGACCG 899 Query 841 CACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGG 900 |||||| |||||||||| ||| ||||||| |||| | || | ||| || ||||| Sbjct 900 CACCGGAACCGGCACGCGCAGCCTGTTCGGCCGCCAGATCCGCTTCGATCTGGCCGAGTC 959 Query 901 CTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTG 960 ||||||||| ||||||| ||||| || |||||||||||||| ||| ||| || || || Sbjct 960 GTTCCCGCTGCTCACCACCAAGCGGGTGCACTTCAAATCGGTCGCGATCGAGCTGCTCTG 1019 Query 961 GTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGA 1020 |||||| | ||||| | ||| ||| |||| |||||||||||| ||||||||||| Sbjct 1020 GTTCCTGCGCGGCGAGAGCAACACCAAGTTCCTCACCGACAACGGCGTGACCATCTGGGA 1079 Query 1021 CGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTG 1080 ||||||||||||||| |||| |||| || || |||||||||| ||||||||| ||| Sbjct 1080 CGAGTGGGCCGACGCGAGCGGCGACCTGGGCCCCGTCTACGGCGTGCAGTGGCGCTCCTG 1139 Query 1081 GCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAGCTGCT 1140 || ||| | ||| || || | || |||||||||||| | | |||| | | Sbjct 1140 GC----CGACGCCGGCGG-GCG-AGCACATCGACCAGATCTCGCAGGTGATCGAGCAGAT 1193 Query 1141 TCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAG 1200 || | |||| ||||||||||| | | || ||||| |||||||| | || ||| Sbjct 1194 CCGTTCGAACCCGGACTCGCGCCGTCTCATCGTCTCCGCGTGGAACGTGGCGGAGCTCGA 1253 Query 1201 CGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCT 1260 | | ||||| || ||||||||| | |||||| | ||||| | ||||||| ||| Sbjct 1254 CCAGATGGCGCTCGCACCGTGCCACGCGTTCTTCCAGTTCTACGTGGCCGACGGCAAGCT 1313 Query 1261 CTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGC 1320 |||| ||| ||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 1314 CTCGTGCCAGCTCTACCAGCGCTCTGCCGACATGTTCCTCGGGGTGCCGTTCAATATCGC 1373 Query 1321 CTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCT 1380 ||| |||||||| || ||| |||| ||||||||||| |||| || | || ||| | Sbjct 1374 CTCCTACGCGCTGCTTACGCTCATGGTCGCGCAGCAGACCGGGCTCGAGCCCGGCGAGTT 1433 Query 1381 GATCTGGACCGGCGGCGACTGCC 1403 ||||||||||||||||||||| Sbjct 1434 CGTCTGGACCGGCGGCGACTGCC 1456 >seq16795 Length=1614 Score = 100 bits (110), Expect = 2e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 41805 CTCCTGCCGTTCAGCGGCGAGAAGATCGTGCGCGCCGCGATCTCCTGC-ACCACGCCTGT 41863 || ||||||||||||| |||| | | ||||||| ||| || || || ||||| | Sbjct 529 CTGCTGCCGTTCAGCGACGAGGGGGTGCTGCGCGCGGCG-TCCGAGGCGACGACGCCGAT 471 Query 41864 CGTCTCGGCCATCGGCCACGAGCCTGACAATCCCGTCCTGGACGACGTCGCCGACTTCCG 41923 ||| || ||||| |||||| | ||| || | || ||||| ||||| ||| | || Sbjct 470 CGTGAGCGCGATCGGGCACGAGGCCGACCGGCCGCTGCTCGACGAGGTCGCTGACCTGCG 411 Query 41924 AGCCGCAACACCGACCGACGCCGCGAAGAACGTCGTGCCCGACATGGTCGCCGAGCTGTC 41983 ||| | |||||||||||||| |||||| ||| ||||||||| | | || ||||| | Sbjct 410 TGCCTCGACACCGACCGACGCGGCGAAGCGCGTGGTGCCCGACGTCGGCGAGGAGCTCGC 351 Query 41984 CGAGATC 41990 || |||| Sbjct 350 CGGGATC 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296010082246659