Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq17206 910 0.0 seq19565 165 3e-36 seq17873 82.4 2e-11 >seq17206 Length=1844 Score = 910 bits (1008), Expect = 0.0 Identities = 1270/1755 (72%), Gaps = 53/1755 (3%) Strand=Plus/Plus Query 39300 ACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGCAAGCGGCTCC 39359 ||||||||||| ||||||| ||| |||||||||| | | ||||| || ||||| ||| Sbjct 64 ACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGTTCC 123 Query 39360 TCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTC 39419 || | |||||| |||||||| ||||||| |||| | ||||||||||| || |||||||| Sbjct 124 TCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAGTTG 183 Query 39420 GTGTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCGCTGATGTCC 39479 ||||| ||| | | ||||| || ||||| ||||||||||||| || || ||||||| Sbjct 184 GTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATGTCC 243 Query 39480 TCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGCTGG 39539 ||||||||||| ||||||| ||||| ||||| |||||| | |||||||||||||||| Sbjct 244 TCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGCTGG 303 Query 39540 AAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGG 39599 || || |||||||||||| | ||| ||||| ||||||| | ||||||| ||| Sbjct 304 AACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGCTCA 363 Query 39600 ATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGGCGCGGATGTTCTCGACCGCGTCGCCC 39659 | | ||| ||||||| | || || |||||| |||||||||||||| |||||| Sbjct 364 AGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCCGAG 423 Query 39660 ATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCAC 39719 |||||||||||||| || ||||| |||||||||||||| | | ||| |||| |||||| Sbjct 424 ATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCGCAG 483 Query 39720 TGGGGGTAGTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGG 39779 |||||||| ||||||| ||| || ||||||| ||| | || ||||| | Sbjct 484 GTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGCGGGATG 543 Query 39780 TGATCGACCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGG 39839 |||| || ||| ||| | |||||||| || || || ||||| |||||| |||||| Sbjct 544 ATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGCCGC 603 Query 39840 ACGAGACCTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGGGTCGTTCTCG 39899 || || ||||| |||||||| |||||| || |||||| || || || |||| Sbjct 604 TTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATC---CTCG 660 Query 39900 TACAGC---CCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATG 39956 ||| | |||| |||| ||||||| | |||||| ||||||||||||| | |||| Sbjct 661 GTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGTGATG 720 Query 39957 CCCTCCAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCG 40016 ||| || || || || |||| ||| ||| ||| |||||| || ||||||||| Sbjct 721 CCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCG 780 Query 40017 CCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTG 40076 || | ||| || | | |||||||||| ||||||||||| ||| | || |||| Sbjct 781 CCCATGCCGAACGGGAAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTG 840 Query 40077 ATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTAC 40136 ||| ||| |||| ||||||| || || || | ||||||||||||||||||||| Sbjct 841 ATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTAC 900 Query 40137 CTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACG 40196 |||| || ||||| || || || ||||||||||||| ||| | ||||||||| || ||| Sbjct 901 TTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACG 960 Query 40197 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTG 40256 || |||||||| ||||| |||||||||||||| |||||| | | || || || || ||| Sbjct 961 CGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTG 1020 Query 40257 ATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCAC 40316 |||| | | ||||||||||| || || || |||||||||| ||||| || || | Sbjct 1021 ATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGG 1080 Query 40317 ACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAC 40376 | |||||| ||||| | |||| ||||||||||||||| || ||||||||| ||||| Sbjct 1081 ATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAG 1140 Query 40377 CCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTGCCATGCTCGTAGTCGG-- 40434 |||| ||| |||| | | |||||||||||| |||||||| || | |||||| Sbjct 1141 CCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGG 1197 Query 40435 -TCCCGTTCGGG-AACCGTCGAGCTGCACCACGGTGGACCTCGTCCTCGAACCACGTAAC 40492 | ||| ||||| | | || | || | || | |||||| | |||||| | | Sbjct 1198 ATGCCGCTCGGGTAGCGGTAGTGCAAC-CCCTTCTCGACCTCCTTGATGAACCAGCTGTC 1256 Query 40493 CTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCATG----AGGTCGGTGTGCTCGAACA 40548 |||||| | || |||||||| || |||| |||||| || || ||| | |||| Sbjct 1257 CTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAACT 1315 Query 40549 TGCCAGTCGTGTCGACGCGCTCGGCGATCTCCAGCGTGGTCCGCATCCCCCACTCCCAGA 40608 | || | | |||||||||||| |||||| | || | | | | | Sbjct 1316 CGACA------TTGCAGCGCTCGGCGATGAGGAGCGTGTT----GTCGCACGCGTCGGGG 1365 Query 40609 TGGGAGAGGAGTCGATG-GCCGCCATCTCGGCGGCCGACTTGATGTAGTACCCGGAGCCC 40667 | | ||| | ||| |||| ||||||||| || | ||||| |||||| || ||||| Sbjct 1366 AAGTCGCGGAAT--ATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCCG 1422 Query 40668 TCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCAGAGCAGAGCG 40727 |||||| |||||||||||||| ||||| | ||| | ||| ||||||||||| || Sbjct 1423 TCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGCC 1482 Query 40728 TCGTGCGCGGTGCTC-TCCTCGGC--CGTG-ACGTAGTGCGAGTCGTTCGTGACCACGGG 40783 |||||| ||| | ||||| |||| ||||||||| ||||||||| | ||| | Sbjct 1483 GAGTGCGC----CTCGGCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGACGAG 1538 Query 40784 GGTGAGCGCGAGGT-GCTTGCCCAGCCGGTAGAGGTCGTCGCGGACACGCCGCTCGATCT 40842 | || | ||||| || | | | | | ||||||| |||| || |||||||| | Sbjct 1539 CGGGATCTTGAGGTCGCGCG-CGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGT 1597 Query 40843 CCAGGCCGTGGTCCATGATCTC-CAG--GAAGTACCGGTCCCGACCGAAGACCTCCAGGT 40899 | || ||||||||||||| ||| ||| ||||| | || | ||||||| ||| || Sbjct 1598 CGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAGATGTCCTGGA 1654 Query 40900 AC-CGGCCAGCCTCGGCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATC 40958 || ||||| ||| | |||||||||||||||||||||| || |||||| |||| Sbjct 1655 ACTCGGCC-GCCGCCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATC 1713 Query 40959 GCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGT-GCTCGGCGACCAGGTC 41017 | || ||||| ||||| ||| ||| ||||||| | || | || || | ||| || Sbjct 1714 TCGCCCGAGGGGCAACCCGTCGTGGTGATGAGGCCCTTGCCGTAGGTCTGC-AGCAGCTC 1772 Query 41018 GAAGTCCATGCGCGG 41032 | |||||| || || Sbjct 1773 GCGGTCCATACGGGG 1787 >seq19565 Length=416 Score = 165 bits (182), Expect = 3e-36 Identities = 242/341 (71%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 38928 GGCGGCAGGACGTGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCATCTTGTTC 38987 |||||||| || | | ||||| || || |||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 38988 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 39047 || |||||| || ||||||| ||||||||||||||||||||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 39048 AGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 39107 ||||| || || | |||| || || |||||||| || ||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 39108 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAGTAGCCT 39167 || | | ||| || | || | |||||| | ||||| ||| || | || || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 39168 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GCTTC 39224 ||||| | || | |||| | || ||| |||| | || ||||| |||| Sbjct 126 CGCTCCTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTC 70 Query 39225 TTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAG 39265 ||||||||||| || |||||||| | |||||| || || || Sbjct 69 TTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAG 29 >seq17873 Length=3337 Score = 82.4 bits (90), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 38480 GAGCGACGCCTCCAGCCCGGCAAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCG 38539 ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||| || Sbjct 487 GAGCGCGGCCTCGAGCCCGCGCAGCGGGTGGTCGGAGACGTAGAGGCCCAGCATCTCGCG 428 Query 38540 CTCGA 38544 ||||| Sbjct 427 CTCGA 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160076981789352