Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031099.1 Length=44536 Score E Sequences producing significant alignments: (Bits) Value seq16942 86.0 2e-12 >seq16942 Length=2220 Score = 86.0 bits (94), Expect = 2e-12 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 38275 CGACGACCCCGACACGCTGCTCGTCGACGCGGCGAGGCTGGTGATCGAGACACAGTTCGC 38334 |||||||| ||| |||||||| || || | |||| || ||| || | ||||||| Sbjct 278 CGACGACCTCGAGGTGCTGCTCG-CGGCG-GTCGAG-CTCGTGGTCTCCTCGCAGTTCGG 222 Query 38335 GTCCGGATCGATGCTGCAGCGCAAGCTCAACATCGGGTACGCGCGCGCCGGCCGCTTACT 38394 ||| ||||||||||||||||||||| | |||| | |||| ||||||||| | | Sbjct 221 CTCCACCTCGATGCTGCAGCGCAAGCTCCGCGTCGGCTTCGCGAAGGCCGGCCGCCTCAT 162 Query 38395 CGACGAGCTCGAAGGCCTCGACATCGTCGGCCCCGCCCAGGGCAGCAAGGCCCGAGAGGT 38454 || | | || || ||||||||| ||||| || |||| |||||||| || || Sbjct 161 GGATCTGATGGAGTCCCGCGACATCGTGGGCCCGTCCGAGGGTTCGAAGGCCCGCGACGT 102 Query 38455 ACTCGT 38460 ||||| Sbjct 101 CCTCGT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142336854281484