Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq17077 87.8 3e-12 >seq17077 Length=1461 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 202204 CATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTAT 202263 ||| ||||| ||| | | ||| | || ||| | ||| |||| ||| || ||| | Sbjct 1161 CATCGACCAGATCTCGCAGGTGATCGAGCAGATCCGTTCGAACCCGGACTCGCGCCGTCT 1220 Query 202264 TATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACGAGATGGCCTTGGCCCCGTGTCATGC 202323 || ||| ||| ||||||||||| ||||| ||| ||||||| | || ||||| || || Sbjct 1221 CATCGTCTCCGCGTGGAACGTGGCGGAGCTCGACCAGATGGCGCTCGCACCGTGCCACGC 1280 Query 202324 GTTCTTCCAGTTCTAC 202339 |||||||||||||||| Sbjct 1281 GTTCTTCCAGTTCTAC 1296 Score = 86.0 bits (94), Expect = 1e-11 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| ||||| || ||||| | | | ||||| |||||||| ||||| | | Sbjct 894 CGACCGCACCGGAACCGGCACGCGCAGCCTGTTCGGCCGCCAGATCCGCTTCGATCTGGC 953 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT-GAGC 201965 || || |||||| |||||||||| ||| ||| | || || | || |||| Sbjct 954 CGAGTCGTTCCCGCTGCTCACCACCAAGCGGGTGCACTTCAAATCGGTCG-CGATCGAGC 1012 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 |||| |||||||| || || | ||||| | ||| | | |||||| ||| |||| Sbjct 1013 TGCTCTGGTTCCTGCGCGGCGAGAGCAACACCAAGTTCCTCACCGACAACGGCGTGACCA 1072 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 |||||||||| ||||| || | ||| ||| | ||||| || ||||| ||| |||| Sbjct 1073 TCTGGGACGAGTGGGCCGACGCGAGCGGCGACCTGGGCCCCGTCTACGGCGTGCAGTGGC 1132 Query 202086 G 202086 | Sbjct 1133 G 1133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787672642507640