Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq17077 102 1e-16 >seq17077 Length=1461 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| ||||| || ||||| | | ||||| ||||| || || || ||| | Sbjct 895 GACCGCACCGGAACCGGCACGCGCAGCCTGTTCGGCCGCCAGATCCGCTTCGATCTGGCC 954 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | |||||||||| |||||||||| | ||||| | ||| || ||| ||| Sbjct 955 GAGTCGTTCCCGCTGCTCACCACCAAGCGGGTGCACTTCAAATCGGTCGCGATCGAGCTG 1014 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||||||||| |||||| | ||||| | ||| || | |||||| ||| | ||| Sbjct 1015 CTCTGGTTCCTGCGCGGCGAGAGCAACACCAAGTTCCTCACCGACAACGGCGTGACCATC 1074 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| |||||||| || | ||||| || |||||||||||||| ||||||||| Sbjct 1075 TGGGACGAGTGGGCCGACGCGAGCGGCGACCTGGGCCCCGTCTACGGCGTGCAGTGGCG 1133 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || || || ||||| ||||||||| ||| ||| | |||||||| || |||||||| ||| Sbjct 1312 CTCTCGTGCCAGCTCTACCAGCGCTCTGCCGACATGTTCCTCGGGGTGCCGTTCAATATC 1371 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || || ||||| ||| | | |||||| || |||||| | | | | | || || Sbjct 1372 GCCTCCTACGCGCTGCTTACGCTCATGGTCGCGCAGCAGACCGGGCTCGAGCCCGGCGAG 1431 Query 196869 TTCGTCTGGACGGGCGGCGA 196888 ||||||||||| |||||||| Sbjct 1432 TTCGTCTGGACCGGCGGCGA 1451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769984065758440